View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_13 (Length: 425)
Name: NF19917_high_13
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 40996530 - 40996124
Alignment:
| Q |
1 |
acttaaatatgctatattgtacaatctaatcctttcccctagacccgaccaagacattggggaaatattggctaaattatccagatatcaagagcaaatc |
100 |
Q |
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| T |
40996530 |
acttaaatatgctatattgtacaatctaatcctttcccctagacccgaccaagacattggggaaatattggctaaattatccagatatcaagagcaaatc |
40996431 |
T |
|
| Q |
101 |
caggaccacatccctaattagccaataaagagtagctaaaatattcacttggctactatagggagttggtgaaattgtataaactaagctggatgttgct |
200 |
Q |
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| T |
40996430 |
caggaccacatccctaattagccaataaggagtagctaaaatattcacttggctactatcgggagttggtgaaattgtataaactaagctggatgttgct |
40996331 |
T |
|
| Q |
201 |
tgttagaacaagttgctcttgaatggtaataattaatcttagatataatttgaaggtaactccatatataacttctttttgagcc-ttttaccttgaaga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
40996330 |
tgttagaacaagttgctcttgaatggtaataattaatcttagatataatttgaaggtaact--atatataacttctttttgagcctttttaccttgaaga |
40996233 |
T |
|
| Q |
300 |
tgacttctacttcttctaatcacacacacaattaatagaagtatataaaggacaatgtatgttggccaatttttcattgcaatcaaaactaatcacatta |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40996232 |
tgacttctacttcttctaatcacacacacaattaatagaagtatataaaggacaatgtatgttggccaatttttcattgcaatcaaaactaatcacatta |
40996133 |
T |
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| Q |
400 |
ttactaccc |
408 |
Q |
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| T |
40996132 |
ttactaccc |
40996124 |
T |
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