View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_18 (Length: 393)
Name: NF19917_high_18
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 76 - 376
Target Start/End: Original strand, 2782917 - 2783216
Alignment:
| Q |
76 |
aatgtttggttacgaatttcaaccaagtatgccaacgtctccaactacagagcagttgtaattctgtctgatagtgaatgaattagagtttgcagtgcta |
175 |
Q |
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| T |
2782917 |
aatgtttggttacgaatttcaaccaagtatgccaacgtcgccaactacagagcagttgtaattctgtctgatagtgaatgaattagagtttgcagtgcta |
2783016 |
T |
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| Q |
176 |
caactcatatataaatactacggtccaaattacaagaatcaagggtggagctaggcttttgagcctagaatttaaaaagaaatgcaaatatacccttata |
275 |
Q |
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| T |
2783017 |
caactcatatataaatactacggtccaaattacaagaatcaagggtggagctaggcttttgagcctaga----aaaaagaaatgcaaatatacccttata |
2783112 |
T |
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| Q |
276 |
ttttgcattttaaaccccta---nnnnnnnnnncaccactagacaaaagctctaaaactaaaaaatttgaacacctaggttaaatttctggctatgccac |
372 |
Q |
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| T |
2783113 |
ttttgcattttaaacccctatttttttttttttcagcactaaacaaaagctctaaaactcaaaaatttgaacacctaggttaaatttctggctatgccac |
2783212 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 3267745 - 3267697
Alignment:
| Q |
144 |
tgatagtgaatgaattagagtttgcagtgctacaactcatatataaata |
192 |
Q |
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||||| |||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
3267745 |
tgataatgaatgaattagggtttacagttttacaactcatatataaata |
3267697 |
T |
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