View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19917_high_2 (Length: 795)

Name: NF19917_high_2
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19917_high_2
NF19917_high_2
[»] chr5 (1 HSPs)
chr5 (18-780)||(43363156-43363929)


Alignment Details
Target: chr5 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 18 - 780
Target Start/End: Original strand, 43363156 - 43363929
Alignment:
Q  18 gagatcacctagacttgaacataattttgacgaataatgaaatgtatatttgaacacatgaaatttgtggataatcatattcaaaatcgtgtt------- 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  43363156 gagatcacctagacttgaacataattttgacgaataatgaaatgtatatttgaacacatgaaatttgtggataatcatattcaaaatcgtgtttaattgt 43363255  T
Q  111 ---atatgaatgataagttgtcacgccttgttattcattaaccaataaatttgatgataaattcttctaaatatgatttttcattttgtattttcaattg 207  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  43363256 gttatatgaatgataagttgtcacgccttgttattcattaaccaataaatttgatgataaattcttctaaatatcatttttcattttgtattttcaatta 43363355  T
Q  208 tttgtaccaaagcagagaaattgaaaagaaagttgaagaaattatggacaatggttcttcaattgtataannnnnnnacatgtacatacaaacacactac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||    
T  43363356 tttgtaccaaagcagagaaattgaaaagaaagttgaagaaattatggacaatggttcttcaattgtatcatttttttacatgtacatacaaacacactac 43363455  T
Q  308 a-aagcaatcacattaagatagaacagcattgtatggaatggccacttctgctgcccctatggctatcctgtcctattcataaaaagaatcccttatcaa 406  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43363456 acaaacaatcacattaagatagaacagcattgtatggaatggccacttctgctgcccctatggctatcctgtcctattcataaacagaatcccttatcaa 43363555  T
Q  407 accttcccacaaatttcagtttcagaagcttcagcatattagtggcctatatatacagttgccacaagcctacaatctacattttgaagcagcttctcat 506  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43363556 accttcccacaaatttcagtttcaaaagcttcggcatattagtggcctatatatacagttgccacaagcctacaatctacattttgaagcagcttctcat 43363655  T
Q  507 acaaaatctaataaactatatacaaaggcttaattttcagtactgtttgaagatcttattcttatcagtgcaagaagagggaaaagcaagcagagagaag 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43363656 acaaaatctaataaactatatacaaaggcttaattttcagtactgtttgaagatcttattcttatcagtgcaagaagagggaaaagcaagcagggagaag 43363755  T
Q  607 ttgctagaattcgaacatctaatctgagaagaatacttgcacttcagcttggtcagtacccattagaagggggagcgaatcaatattagttcctttgagc 706  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43363756 ttgctagaattcgaacatctaatctgagaagaatacttgtacttcagcttggtcagtacccattagaagggggagcgaatcaatattagttcctttgagc 43363855  T
Q  707 tgaacctgctttctataattgtccaaatcataatctaattcagaccactcccgttcttcctcagcaggcttctt 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43363856 tgaacctgctttctataattgtccaaatcataatctaattcagaccactcccgttcttcctcagcaggcttctt 43363929  T

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