View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_22 (Length: 341)
Name: NF19917_high_22
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 49751451 - 49751771
Alignment:
| Q |
1 |
gagaaacctgaaaagtccttgatctcatcatctacaagcttcccagcaatgaaaacagtgttaacaggtaaaccaggtccaaacgcaggttcctttacat |
100 |
Q |
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| T |
49751451 |
gagaaacctgaaaagtccttgatctcatcatctacaagcttcccagcaatgaaaacagtgttaacaggtaaaccaggtccaaacgcaggttcctttacat |
49751550 |
T |
|
| Q |
101 |
acttatgaaacttccactctcctctttcaacaatcccaaaccctaactctccaaaaacctaatcacaaaacaattaaacaccaaattcataactactttc |
200 |
Q |
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| T |
49751551 |
acttatgaaacttccactctcctctttcaacaatcccaaaccctaactctccaaaaacctaatcacaaaacaattaaacaccaaattcataactactttc |
49751650 |
T |
|
| Q |
201 |
agctcaatgattcaaaacaaaccaaaattcaagagcactacctcttttagagcggaatggatatcgaattcactgaaatcgaactcatcggaatgtgata |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49751651 |
agctcaataattcaaaacaaaccaaaattcaagagcactacctcttttagagcggaatggatatcgaattcactgaaattgaactcatcggaatgtgata |
49751750 |
T |
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| Q |
301 |
ccgaaatttgtacctcgaccg |
321 |
Q |
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||||||||||||||||||||| |
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| T |
49751751 |
ccgaaatttgtacctcgaccg |
49751771 |
T |
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