View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_3 (Length: 599)
Name: NF19917_high_3
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Complemental strand, 9954166 - 9953589
Alignment:
| Q |
1 |
acaacaaacaaaaaggataatattgccacttgagacatcctttgtctttctttaaaatacaaacaaaaatttaatacataattataattatgactgacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9954166 |
acaacaaacaaaaaggataatattgccacttgagacatcctttgtctttctttaaaatacaaacaaaaatttaatacataattataattatgactgacct |
9954067 |
T |
|
| Q |
101 |
tacactcttttggtcccctctttaatcaattcttatctttcttgatcatgtttagattatagttacgccacgaaaacactacctagaccgttaacatggt |
200 |
Q |
| |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9954066 |
tacactctttggtccccctctttaatcaattcttatctttcttgatcatgtttagattatagttacgccacgaaaacactacctagaccgttaacatggt |
9953967 |
T |
|
| Q |
201 |
tttctagtcttgtacctttccatacaataaggaaagatggggaccaattgaccaaaatttattatttatttacaaatataagaatacaccaatctttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
9953966 |
tttctagtcttgtacctttccatacaataaggaaagatggggaccaattgaccaaaatttattatttatttacaaatataagaaaacaccaatcttcttc |
9953867 |
T |
|
| Q |
301 |
tacataagtttctgagaggaaagaatctatgtctatctaggtttttgtacctgtgtttagaggatagagtttatggtttttgtgaattctgtcattttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9953866 |
tacataagtttctgagaggaaagaatctatgtctatctaggtttttgtacctgtgtttagaggatagagtttatggtttttgtgaattctgtcattttct |
9953767 |
T |
|
| Q |
401 |
taaagatgtaaaaaactttataagtacatttatttgtaaataaatatgtcaataattttagaaatatgaagnnnnnnnntagagataagccctacctatg |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
9953766 |
taaagatgtaaaaaactttatatgtacatttatttgtaaataaatatgtcaataattttataaatatgaa---aaaaaatagagataagccctacctatg |
9953670 |
T |
|
| Q |
501 |
aagaatagcactcttacaattatgcatgtctccgtctaacacgtgtcagtatccaacactcatgcgatacgtggatgctct |
581 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9953669 |
aagaatagcactcttacaattacgcatgtctctgtctaacacgtgtcagtatccaacactcatgcgatacgtggatgctct |
9953589 |
T |
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