View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19917_high_32 (Length: 292)
Name: NF19917_high_32
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 55456499 - 55456225
Alignment:
| Q |
1 |
aaaatacttattggcgtctcatgatatgcttctacaaagcactttggagaatggaagttacaataaactccacagttataaacacataattaatggcttc |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55456499 |
aaaatacttattagcgtctcatgacatgcttctacaaagcactttggagaatggaagttataataaactccacagttataaacacataattaatggcttc |
55456400 |
T |
|
| Q |
101 |
tctgttcacacaaccccttcccaggttcatctccatatccatttcaatcatttttatatagtacatgcatgcactaaagttattgaatccattgccaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55456399 |
tctgttcacacaaccccttcccaggttcatctccatatccatttcaatcatttttatatagtacatgcatgcactaaagttattgaatccattgccaaaa |
55456300 |
T |
|
| Q |
201 |
atatcaggcaaaaagactaagagctacaccaggagtgaagttagtagagaaagatagaggagtgaaactgatgac |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55456299 |
atatcaggcaaaaagactaagagctacaccaggagtgaagttagtagagaaagatagaggagtgaaactgatgac |
55456225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University