View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19917_high_35 (Length: 284)
Name: NF19917_high_35
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 14256584 - 14256786
Alignment:
| Q |
65 |
tcaaaacttatttacaattacaagtaagcttcttttaagatgtctttacattcacatatgatatgtgtttcaagttttaacaaattatgtttaagtactt |
164 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| |||| ||||| ||||||||| ||||||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
14256584 |
tcaaaatttatttacaattacaagaacacttgttttggcatgtccttacattcaaatatgatatttgtttatggtttta-caaattatgtttaagtactt |
14256682 |
T |
|
| Q |
165 |
tttatgtatatgaagatgatttagggcctttggcttattttagttttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaac |
264 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14256683 |
tttatatatatgaagatgatttagggcctttggcttattttagttttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaac |
14256782 |
T |
|
| Q |
265 |
ttag |
268 |
Q |
| |
|
|||| |
|
|
| T |
14256783 |
ttag |
14256786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 41644387 - 41644443
Alignment:
| Q |
210 |
ttatctactagcataagaacttgtggcactatttagaaaaacttataaaaacaactt |
266 |
Q |
| |
|
||||||||||||||||| ||||| | |||| ||||| | |||||||||||||||||| |
|
|
| T |
41644387 |
ttatctactagcataagcacttgagacactgtttaggagaacttataaaaacaactt |
41644443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University