View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_36 (Length: 283)
Name: NF19917_high_36
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 41 - 266
Target Start/End: Original strand, 35045411 - 35045636
Alignment:
| Q |
41 |
actaaaataagagaaaatgatacattatttcactaataattgtatgacacgttttttaagaagaatctcaaatatataagctaattggataagctattag |
140 |
Q |
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| T |
35045411 |
actaaaataagagaaaatgatacattttttcactaataattgtatgacacgttttttaagaagaatctcaaatatataagctaattggataagctattag |
35045510 |
T |
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| Q |
141 |
tcattttcattgagggtcagaagtcattctcaaactcttaaaagattatattttgtgttggctattgcaacaaactctagaaggtgcaggaaaaaatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045511 |
tcattttcattgagggtcagaagtcattctcaaactcttaaaagattatattttgtgttggctattgcaacaaactctagaaggtgcaggaaaaaatatt |
35045610 |
T |
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| Q |
241 |
aatcaatcaaatagaacctaagcaca |
266 |
Q |
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||||||||||| |||||||||||||| |
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| T |
35045611 |
aatcaatcaaacagaacctaagcaca |
35045636 |
T |
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