View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_42 (Length: 267)
Name: NF19917_high_42
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 43854230 - 43854466
Alignment:
| Q |
20 |
cagaaattaatatataaaataaaagtacaatggtaatatcatattttatcttcttaatttaatttttaactaaatttatggtggaaatttgtcctatgta |
119 |
Q |
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| T |
43854230 |
cagaaattaatatataaaataaaagtacaatggtaatatcatattttatcttcttaatttaatttttaaataaatttatgg---aaatttgtcctatgta |
43854326 |
T |
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| Q |
120 |
gttactcaacaattgcatgggtggcttcattgaaaaagggagttcaaccagatgtggcatatggctacaaagccacaactccaacaggaactgttttcaa |
219 |
Q |
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| T |
43854327 |
gttactcaacaattgcatgggtggcttcattaaaaaagggagttcaaccagatgtggcatatggctacaaagccacaactccaacaggaactgttttcaa |
43854426 |
T |
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| Q |
220 |
tttcttcagtgctttaggtgatgttgcatttgcctttgct |
259 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
43854427 |
tttcttcagtgctttaggtgatgttgcatttgcctatgct |
43854466 |
T |
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