View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19917_high_6 (Length: 563)

Name: NF19917_high_6
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19917_high_6
NF19917_high_6
[»] chr4 (8 HSPs)
chr4 (162-439)||(1390178-1390455)
chr4 (210-393)||(1397688-1397871)
chr4 (5-94)||(1390680-1390772)
chr4 (90-154)||(1359539-1359603)
chr4 (90-153)||(1390489-1390552)
chr4 (467-548)||(45645081-45645162)
chr4 (279-394)||(45645234-45645349)
chr4 (108-143)||(45645613-45645648)
[»] chr5 (9 HSPs)
chr5 (466-548)||(19649578-19649660)
chr5 (442-548)||(34665579-34665682)
chr5 (461-548)||(34645885-34645972)
chr5 (108-143)||(34646414-34646449)
chr5 (108-143)||(34666108-34666143)
chr5 (106-143)||(19649094-19649131)
chr5 (7-41)||(19648866-19648900)
chr5 (288-394)||(19649401-19649507)
chr5 (1-64)||(34666319-34666385)
[»] chr8 (5 HSPs)
chr8 (461-548)||(14191770-14191857)
chr8 (174-373)||(14200962-14201161)
chr8 (497-548)||(40717589-40717640)
chr8 (108-150)||(40718111-40718153)
chr8 (106-150)||(14183354-14183398)
[»] chr6 (1 HSPs)
chr6 (315-361)||(33893429-33893475)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 162 - 439
Target Start/End: Complemental strand, 1390455 - 1390178
Alignment:
Q  162 atagcagcttctccaattgatgaacccaattgatttataagagacgtgggtccatttccaaggccaaccagaccagtgctcttgccttcaaatgacaatg 261  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1390455 atagcagcttcaccaattgatgaacccaattgatttataagagacacgggtccatttccaaggccaaccagaccagagctcttgccttcaaatgacaatg 1390356  T
Q  262 tattattatgtctaaaacctatcactgttttaggaaatgaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtga 361  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1390355 tattattatgtccaaaacctatcactgttttaggaaatgaaatagaagaaccagaggtgaaatctaatgtaagagttttcaaactaagatctccttgtga 1390256  T
Q  362 tattgatccatcaccatacttaatagtatattcgcgagnnnnnnnnattacaagaggtagattcaaaagacttacatt 439  Q
    ||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||| ||| ||||||||    
T  1390255 tattgatccatcaccatacttaatagtatattcgcaagttttttttattacaagaggtagattcacaaggcttacatt 1390178  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 210 - 393
Target Start/End: Complemental strand, 1397871 - 1397688
Alignment:
Q  210 ggtccatttccaaggccaaccagaccagtgctcttgccttcaaatgacaatgtattattatgtctaaaacctatcactgttttaggaaatgaaatagaaa 309  Q
    ||||||||| ||||| |||||| ||||| ||||| |||||||||| ||| | ||||  |||||| | |||||||||| |||||||| ||||||||||||     
T  1397871 ggtccatttgcaaggtcaaccacaccagagctctagccttcaaataacactatatttatatgtccacaacctatcacagttttaggcaatgaaatagaag 1397772  T
Q  310 aaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatcaccatacttaatagtatatt 393  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  1397771 aaccagaggtggaatctaatgtaagagtttctaaactaagatctccttgtgattttgatccatcaccatagtcaatagtatatt 1397688  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 1390772 - 1390680
Alignment:
Q  5 tgcaacttaatatctgcaccttgaaaatgtgcagtgaa---aggaaaatcattttcatttgatgcaaatgaataacaaaggtttaaaatacca 94  Q
    |||||||||||||||||||||| ||||||||||||||    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1390772 tgcaacttaatatctgcaccttcaaaatgtgcagtgattataggaaaatcatattcatttgatgcaaatgaataacaaaggtttaaaatacca 1390680  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 1359603 - 1359539
Alignment:
Q  90 taccatttgattgcttttcaaattctactcttttgtttccaacactaaatgctttcaatgttatt 154  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1359603 taccatttgattgcttttcaaattccactattttgtttccaacactaaatgctttcaatgttatt 1359539  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 1390552 - 1390489
Alignment:
Q  90 taccatttgattgcttttcaaattctactcttttgtttccaacactaaatgctttcaatgttat 153  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  1390552 taccatttgattgctttgaaaattctactcttttgtttccaacactaaatgctttcaatgttat 1390489  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 548
Target Start/End: Complemental strand, 45645162 - 45645081
Alignment:
Q  467 tgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaac 548  Q
    |||||||||||| |||  | ||||||||  ||||||| |||||||||||||| |||| ||||||||  ||||||||||||||    
T  45645162 tgtaacttgatgattttgatggattaaacttaggagtggtttggttgtaacattgtttacaaggctcgcattgaagccaaac 45645081  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 394
Target Start/End: Complemental strand, 45645349 - 45645234
Alignment:
Q  279 cctatcactgttttaggaaatgaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatcaccat 378  Q
    |||||||| |||||||||||||||| ||     |||| |||| |||| |||||||||||||| | ||||||||||||||||||   |||  |||| ||||    
T  45645349 cctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtgaatgtgaatcatctccat 45645250  T
Q  379 acttaatagtatattc 394  Q
    | ||||| ||||||||    
T  45645249 agttaattgtatattc 45645234  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 45645648 - 45645613
Alignment:
Q  108 caaattctactcttttgtttccaacactaaatgctt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  45645648 caaattctactcttttgtttccaacactaaatgctt 45645613  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 466 - 548
Target Start/End: Original strand, 19649578 - 19649660
Alignment:
Q  466 ttgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaac 548  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| ||||| || |||||||||||||||||||||||||||||    
T  19649578 ttgtaacttgatgattttgaaggattaaatataggagtggtttgcttgtagcattgttcacaaggcttacattgaagccaaac 19649660  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 34665682 - 34665579
Alignment:
Q  442 ttagacaaacaagaaatattgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaa 541  Q
    ||||||||||||| |||   ||| |||||||| |||| |||  | |||||||| || ||||| |||||||||||||| ||||||||||||| ||||||||    
T  34665682 ttagacaaacaaggaat---gtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcacattgaa 34665586  T
Q  542 gccaaac 548  Q
    |||||||    
T  34665585 gccaaac 34665579  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 548
Target Start/End: Complemental strand, 34645972 - 34645885
Alignment:
Q  461 tgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaac 548  Q
    |||| |||||||| |||| |||  | |||||||| || ||||| |||||||||||||| |||||||||||||  ||||||||||||||    
T  34645972 tgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaac 34645885  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 34646449 - 34646414
Alignment:
Q  108 caaattctactcttttgtttccaacactaaatgctt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  34646449 caaattctactcttttgtttccaacactaaatgctt 34646414  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 34666143 - 34666108
Alignment:
Q  108 caaattctactcttttgtttccaacactaaatgctt 143  Q
    ||||||||||||||||||||||||||||||||||||    
T  34666143 caaattctactcttttgtttccaacactaaatgctt 34666108  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 19649094 - 19649131
Alignment:
Q  106 ttcaaattctactcttttgtttccaacactaaatgctt 143  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19649094 ttcaaattctattcttttgtttccaacactaaatgctt 19649131  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 19648866 - 19648900
Alignment:
Q  7 caacttaatatctgcaccttgaaaatgtgcagtga 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  19648866 caacttaatatctgcacctttaaaatgtgcagtga 19648900  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 394
Target Start/End: Original strand, 19649401 - 19649507
Alignment:
Q  288 gttttaggaaatgaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatcaccatacttaatag 387  Q
    |||||||||||||||| ||||  ||| | |||| |||| ||||||||||| || | |||||| |||||||||||   ||||  ||||| | | |||||||    
T  19649401 gttttaggaaatgaaacagaatgaccggtggtggaatccaatgtaagagtctcaacactaagttctccttgtgaatatgattgatcactaaagttaatag 19649500  T
Q  388 tatattc 394  Q
    |||||||    
T  19649501 tatattc 19649507  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34666385 - 34666319
Alignment:
Q  1 agaatgcaacttaatatctgcaccttgaaaatgtgcagtg---aaaggaaaatcattttcatttgat 64  Q
    ||||||||||| |||||| ||||||| ||||||||| |||   | ||||||||||| ||||||||||    
T  34666385 agaatgcaactcaatatcggcacctttaaaatgtgcggtgattataggaaaatcatattcatttgat 34666319  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 461 - 548
Target Start/End: Complemental strand, 14191857 - 14191770
Alignment:
Q  461 tgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaac 548  Q
    |||| ||||||||||| | |||| | |||||||| |||||||| |||||||||||||| | || |||||||| |||||||||||||||    
T  14191857 tgtttttgtaacttgacgatttcgacggattaaacataggagtggtttggttgtaacattcttgacaaggctcacattgaagccaaac 14191770  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 174 - 373
Target Start/End: Complemental strand, 14201161 - 14200962
Alignment:
Q  174 ccaattgatgaacccaattgatttataagagacgtgggtccatttccaaggccaaccagaccagtgctcttgccttcaaatgacaatgtattattatgtc 273  Q
    |||||||||| ||||||||||  |  ||||||| | |||||| ||||||||||||| | ||||| |||   ||| | ||| | |  ||||||  ||| ||    
T  14201161 ccaattgatgtacccaattgagatggaagagacataggtccacttccaaggccaactataccagagcttgggccatgaaacgtccctgtatttctatatc 14201062  T
Q  274 taaaacctatcactgttttaggaaatgaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatc 373  Q
     | | ||||||| |||||||||||||||||  ||  | || | |||| |||||||||||||||| |||| |||||||| ||||||||| |||||||||||    
T  14201061 cacatcctatcattgttttaggaaatgaaactgagtagccggtggtggaatctaatgtaagagtctccacactaagatatccttgtgaaattgatccatc 14200962  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 548
Target Start/End: Complemental strand, 40717640 - 40717589
Alignment:
Q  497 taggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaac 548  Q
    ||||||| |||||||||||||| |||||||||||||  ||||||||||||||    
T  40717640 taggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaac 40717589  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 40718153 - 40718111
Alignment:
Q  108 caaattctactcttttgtttccaacactaaatgctttcaatgt 150  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  40718153 caaattctattcttttgtttccaacactaaatgcttccaatgt 40718111  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 14183398 - 14183354
Alignment:
Q  106 ttcaaattctactcttttgtttccaacactaaatgctttcaatgt 150  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||    
T  14183398 ttcaaattctattcttttgttaccaacactaaatgcttccaatgt 14183354  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 33893475 - 33893429
Alignment:
Q  315 gaggtgaaatctaatgtaagagtttccaaactaagatctccttgtga 361  Q
    |||||| |||||||||| ||||| |||| ||||||||||||||||||    
T  33893475 gaggtggaatctaatgttagagtctccatactaagatctccttgtga 33893429  T

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