View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_60 (Length: 231)
Name: NF19917_high_60
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 5527599 - 5527765
Alignment:
| Q |
16 |
atgaacaaattgattaaactatgctttaaacttgtgttgtagtacgagcttatatgaacacgaggcgtagcctccaacttcatgctagtgctctcttttt |
115 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5527599 |
atgaacaaattgattaaactatactttaaacttgtattgttctacgtgcttatatgaacacgaggcgtagcctccaacttcatgctagtgctctcttttt |
5527698 |
T |
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| Q |
116 |
gagaaaggtgtgcctcgcatcacataaatccaagtcggtttcgattctgattttttccaccgtcttc |
182 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5527699 |
gagaaaggtgtgcctcacatcacataaatccaagtcggtttcgtttctgattttttccaccgtcttc |
5527765 |
T |
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