View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_67 (Length: 219)
Name: NF19917_high_67
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_67 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 38025633 - 38025434
Alignment:
| Q |
14 |
attcaaaattggaagaaaatttggaatgtaaagtcacatcacaaaatttatcacacaaattatggtatagtctagaatacttttattgataacaaattta |
113 |
Q |
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| T |
38025633 |
attcaaaattggaagaaaatttggaatgtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtatacttttattgataacaaattta |
38025534 |
T |
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| Q |
114 |
cactagtccatctattcggtcctaatacacaatcatctacttcaatttcaatagttctgttttaacttttaaacactcagctcaagaatatttatcacga |
213 |
Q |
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| T |
38025533 |
cactactccatctattcggtcttaatacacaatcatctactt------caatagttctgttttaacttttaaacactcagctcaaaaatatttatcacga |
38025440 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 38032270 - 38032176
Alignment:
| Q |
35 |
tggaatgtaaagtcacatcacaaaatttatcacacaaattatggtatagtcta-----gaatacttttattgataacaaatttacactagtccat |
124 |
Q |
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| T |
38032270 |
tggaaagtaaattcacatcacaaaatttatcacacaaattatggtatagtctagtaatgtatacttttattgatagcaaatttacactactccat |
38032176 |
T |
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