View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_high_7 (Length: 525)
Name: NF19917_high_7
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Original strand, 40632193 - 40632690
Alignment:
| Q |
12 |
aatactaaaaactgaacaatgtaaattgattagtgaagnnnnnnntcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaa |
111 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632193 |
aatactaaaaactgaacaatgtaaattaattagtgaagaaaaaaatcatttacgatgctaacaaaatatcttattagatatatgaaaatagtggaagcaa |
40632292 |
T |
|
| Q |
112 |
cttaatgaaaatggaggnnnnnnncactaggtcgatctaggtgggggaagtggttgtctctcatcatgccccacttgatgactggtctggaaataaaaca |
211 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632293 |
cttaatgaaaatggaggaaaaaaacactaggtcgatctaggtgggggaagtggttgtctctcatcatgccccacttgatgactggtctggaaataaaaca |
40632392 |
T |
|
| Q |
212 |
atcagctgaacacacatgagacactcggactaaaacaatctacggtgatagattgtacctcctcatttgctacttctaccatatttataaacgattcctt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40632393 |
atcagctgaacacacatgagacactcggactaaaacaatctatggtgatagattgtacctcctcatttgctacttctaccatatttataaacgattcctt |
40632492 |
T |
|
| Q |
312 |
tgacatgaaatcaacacaagcatttgttattgcaaggattagattttagataaaaatcataagcaaaggtgaaaaacacttgcgttttcatcttaatgga |
411 |
Q |
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| T |
40632493 |
tgacatgaaatcaacacaagcatttgttattgcaaggattagattttagataaaaatcataagcaaaggtgaaaaacacttgcgttttcatcttaatgga |
40632592 |
T |
|
| Q |
412 |
aatatgattagcgtgcaagagaaaagttgaatcttttaatttttatgcaatatatccaacctgtaaatatagttcaacaaaatgtttgacagaattgg |
509 |
Q |
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| T |
40632593 |
aatatgattagcgtgcaagagaaaagttgaatcttttaatttttatgcaatatatccaacgtgtaaatatagttcaacaaaatgtttgacagaattgg |
40632690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 33233682 - 33233739
Alignment:
| Q |
65 |
gatgctaacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaa |
122 |
Q |
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|||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
33233682 |
gatgttaacataatatcttgttaaatatatgaaaatagtggaagcaacttaatgaaaa |
33233739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 42775696 - 42775754
Alignment:
| Q |
70 |
taacaaaatatcttattagatatatgaaaatagtggaagcaacttaatgaaaatggagg |
128 |
Q |
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| T |
42775696 |
taacaaaatatcacattacatatatgaaaatagtagaagcaacttaattaaaatggagg |
42775754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 52738113 - 52738047
Alignment:
| Q |
140 |
aggtcgatctaggtgggg-gaagtggttgtctctcatcatgccccacttgatgactggtctggaaat |
205 |
Q |
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| T |
52738113 |
aggtcgatctaggtggggagaagtggctgtctctcatcatgtcccactcgatgactggcctgaaaat |
52738047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 42955132 - 42955091
Alignment:
| Q |
290 |
ccatatttataaacgattcctttgacatgaaatcaacacaag |
331 |
Q |
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| T |
42955132 |
ccatatttctaaacgaatcctttgacatgaaattaacacaag |
42955091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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