View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_10 (Length: 460)
Name: NF19917_low_10
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 45974256 - 45973816
Alignment:
| Q |
1 |
ataaagaaaacaataacacatgttaaggaattgttgtttacagctttagttttctgtttaatgaattgattcttaattttactggttttcatgtgagcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45974256 |
ataaagaaaacaataacacatgttaaggaattgttgtttacagctttagttttctgtttaatgaattaattcttaattttactggttttcatgtgagcct |
45974157 |
T |
|
| Q |
101 |
tgcagcagggatatagtaagtaaacattcatttcaatacttggttgttgcctttagagagtagaggttcacttgggctaa--catcttttgtcatgtcat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45974156 |
tgcagcagggatatagtaagtaaacattcatttcaatacttggttgttgcctttagagagtagaggttcacttgggctaaaacatcttttgtcatgtcat |
45974057 |
T |
|
| Q |
199 |
ttgaagttagttgttacttacttttgtccatttaagctctttggcatatacacaatcttgattttatgagtacagaagtcttgttatttaatcattccgt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974056 |
gtgaagttagttgttacttacttttgtccatttaagctctttggcatatacacaatcttgattttatgagtacagaagtcttgttatttaatcattccgt |
45973957 |
T |
|
| Q |
299 |
tagaattgatttctagaggatttatttgcctgttttagtaagaattaatttattgaggatttagttgtctattttgttaatctatgtaaatggtgatcag |
398 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45973956 |
tagaattgatttcttgaggatttatttgcctgttttagtaagaattaatttattgaggatttagttgtctattttgttaatctatgtaaa---tgatcag |
45973860 |
T |
|
| Q |
399 |
aaaaatatatattgttagctatataaatgtttttgagtgccact |
442 |
Q |
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| T |
45973859 |
aaaaatatatattgttagctatataaatgtttttgagtgccact |
45973816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 45962247 - 45962124
Alignment:
| Q |
74 |
taattttactggttttcatgtgagccttgcagcagggatatagtaagtaaacattcatttcaat-------acttggttgttgcctttagagagtagagg |
166 |
Q |
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||||||||||||||||||||||||| |||||| | ||| |||||| | ||||||||||||| |||||| |||||| || ||||||| |||| |
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| T |
45962247 |
taattttactggttttcatgtgagcgttgcaga---gttatggtaagtgaccattcatttcaatgtataatacttggatgttgctttaagagagtggagg |
45962151 |
T |
|
| Q |
167 |
ttcacttgggctaacatcttttgtcat |
193 |
Q |
| |
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|||| ||| ||||||||||||||||| |
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| T |
45962150 |
ttcaattgaactaacatcttttgtcat |
45962124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 45980020 - 45979980
Alignment:
| Q |
357 |
atttagttgtctattttgttaatctatgtaaatggtgatca |
397 |
Q |
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| T |
45980020 |
atttagttgtctattttgttagtctatggaaatggtgatca |
45979980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Complemental strand, 45962013 - 45961978
Alignment:
| Q |
339 |
agaattaatttattgaggatttagttgtctattttg |
374 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |
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|
| T |
45962013 |
agaattaattttttgaggatttagttgtctattttg |
45961978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 45980371 - 45980330
Alignment:
| Q |
7 |
aaaacaataacacatgttaaggaattgttgtttacagcttta |
48 |
Q |
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|||||| || ||||||||||||||| |||||||||||||||| |
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| T |
45980371 |
aaaacattatcacatgttaaggaatagttgtttacagcttta |
45980330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 40893599 - 40893665
Alignment:
| Q |
147 |
ttgcctttagagagtagaggttcacttgggctaacatcttttgtcatgtcatttgaagttagttgttactta |
218 |
Q |
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||||||||||| |||| |||||||||||| | |||||||| ||||||||||||||||| ||||||||| |
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| T |
40893599 |
ttgcctttagaaagtaaaggttcacttggtcaaacatctt-----atgtcatttgaagttagatgttactta |
40893665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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