View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19917_low_11 (Length: 458)

Name: NF19917_low_11
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19917_low_11
NF19917_low_11
[»] chr4 (10 HSPs)
chr4 (144-440)||(44185821-44186122)
chr4 (144-401)||(1327019-1327275)
chr4 (1-140)||(44186158-44186297)
chr4 (25-140)||(4877850-4877965)
chr4 (5-140)||(1327311-1327446)
chr4 (144-243)||(4877715-4877814)
chr4 (265-306)||(4877677-4877718)
chr4 (402-440)||(4877441-4877479)
chr4 (407-440)||(1326836-1326869)
chr4 (7-56)||(1328887-1328936)
[»] chr8 (2 HSPs)
chr8 (144-222)||(26532281-26532359)
chr8 (256-345)||(26532180-26532269)
[»] chr3 (2 HSPs)
chr3 (309-399)||(5388179-5388269)
chr3 (405-440)||(5388018-5388053)
[»] chr5 (1 HSPs)
chr5 (194-345)||(18011246-18011396)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 144 - 440
Target Start/End: Complemental strand, 44186122 - 44185821
Alignment:
Q  144 tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttc-----acccactcgtcag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     |||||||||||||    
T  44186122 tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaacaagtcaaagtatctcttctcttcacccactcgtcag 44186023  T
Q  239 gatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44186022 gatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattatcatcgctcaagttaaaagaaa 44185923  T
Q  339 ccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatcttatagtcgtcattaacagggtc 438  Q
    ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44185922 ccatgtatggatcagctacattcgtatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatcttatagtcgtcattaatagggtc 44185823  T
Q  439 at 440  Q
    ||    
T  44185822 at 44185821  T

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Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 144 - 401
Target Start/End: Complemental strand, 1327275 - 1327019
Alignment:
Q  144 tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatca 243  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  1327275 tatgtgaaaagaagatgtctttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtaccttttcacccactcgtcaggatca 1327176  T
Q  244 ctttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatg 343  Q
     ||||| |||| |||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||    
T  1327175 gtttctatctt-cacccactcattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatg 1327077  T
Q  344 tatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacacct 401  Q
    |||| ||||||||| | | | | |||||||||||| |||| |||||||||||||||||    
T  1327076 tatgcatcagctacattcgtgttcgcccaccaatgacacattccattcaagtacacct 1327019  T

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Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 44186297 - 44186158
Alignment:
Q  1 ccagatcttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacatgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||| |||||||| ||||    
T  44186297 ccagatcttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaactttttttccttctccaacaggaca 44186198  T
Q  101 ctccacgctaggcaagggtccgacaataaagagtttagtc 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44186197 ctccacgctaggcaagggtccgacaataaagagtttagtc 44186158  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 4877965 - 4877850
Alignment:
Q  25 ttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacatgacactccacgctaggcaagggtccgac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||| |||||||||||||||||||||||     
T  4877965 ttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcacctttttttcctgctccaacaggacgctccacgctaggcaagggtccgat 4877866  T
Q  125 aataaagagtttagtc 140  Q
    ||||||||||||||||    
T  4877865 aataaagagtttagtc 4877850  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 1327446 - 1327311
Alignment:
Q  5 atcttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacatgacactcc 104  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||       |||||||||| | ||| ||||    
T  1327446 atcttcaattgtttgggtatttaaatcaaaacaagctacttcattgtcattttttagaaagaatatatcgcctttttttcctgctccaataggacgctcc 1327347  T
Q  105 acgctaggcaagggtccgacaataaagagtttagtc 140  Q
    |||| |||||||||||||||||| ||||||||||||    
T  1327346 acgccaggcaagggtccgacaatgaagagtttagtc 1327311  T

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Target: chr4; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 4877814 - 4877715
Alignment:
Q  144 tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatca 243  Q
    |||||||||||||| |||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4877814 tatgtgaaaagaagttgtctttacatgctttgagatcaatgcaacaaacccatttaacaccaccaagtcaaagtatctattcacccactcgtcaggatca 4877715  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 4877718 - 4877677
Alignment:
Q  265 atcaggatagctatcttgcatatccaagggtaaatgtgtagt 306  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  4877718 atcagaatagctatcttgcatatccaagggtaaatgtgtagt 4877677  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 4877479 - 4877441
Alignment:
Q  402 catgacgaatgatcttatagtcgtcattaacagggtcat 440  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  4877479 catgacgaatgatcttatagtcgttattaacagggtcat 4877441  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 440
Target Start/End: Complemental strand, 1326869 - 1326836
Alignment:
Q  407 cgaatgatcttatagtcgtcattaacagggtcat 440  Q
    ||||||||||||||||||||||||||||||||||    
T  1326869 cgaatgatcttatagtcgtcattaacagggtcat 1326836  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 1328936 - 1328887
Alignment:
Q  7 cttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattt 56  Q
    |||||||| |||| ||||||||||||||||| |||| | |||||||||||    
T  1328936 cttcaattatttgggtatttaaatcaaaacaggctaatccattgtcattt 1328887  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 26532359 - 26532281
Alignment:
Q  144 tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctc 222  Q
    |||||||||||  |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  26532359 tatgtgaaaagctgctgtctttacatgctttaagatcatagcaacaaacccatttaacaccaccaagtctaagtatctc 26532281  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 26532269 - 26532180
Alignment:
Q  256 cacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgta 345  Q
    ||||||||||||| |||| |||||||||||||||||||||||  |||||||  | ||  |||||  ||||||||||||||||||||||||    
T  26532269 cacccattcatcatgatatctatcttgcatatccaagggtaacagtgtagtagaaaacatctcagtgctcaagttaaaagaaaccatgta 26532180  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 399
Target Start/End: Complemental strand, 5388269 - 5388179
Alignment:
Q  309 agaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacac 399  Q
    |||| ||||||| |||||||||||||||||||||||||| |||| |||  ||  ||| |||||||||||| |||| |||||||||||||||    
T  5388269 agaagttctcattgctcaagttaaaagaaaccatgtatgcatcatctatatctctattcgcccaccaatgacacagtccattcaagtacac 5388179  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 5388053 - 5388018
Alignment:
Q  405 gacgaatgatcttatagtcgtcattaacagggtcat 440  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5388053 gacgaatgatcttatagtcgtcattaatagggtcat 5388018  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 345
Target Start/End: Original strand, 18011246 - 18011396
Alignment:
Q  194 catttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagg 293  Q
    |||||||||||||||||||||||||||||||| | ||||| |  ||| |||||||||| ||||||| | || |||  ||  |||||||| |||||||||     
T  18011246 catttaacaccaccaagtcaaagtatctcttcgcacactcctttggagcactttctct-tttcacctactcctcacaatttctatcttgaatatccaaga 18011344  T
Q  294 gtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgta 345  Q
    |||||||  |||| |||||   ||||  || |||||||||||||| ||||||    
T  18011345 gtaaatgcttagtaaagaacacctcactgcacaagttaaaagaaatcatgta 18011396  T

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