View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_12 (Length: 455)
Name: NF19917_low_12
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 37 - 299
Target Start/End: Complemental strand, 31599663 - 31599401
Alignment:
| Q |
37 |
tcagtagaagatatggacaacataacacacactttcaaagactgtgaagaacaaaatgaaaacactaatgttgaaacactttctgcagtttcaaccctat |
136 |
Q |
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| T |
31599663 |
tcagtacaagacttggaaaacataacacacactttcaaagactgtgaagaacaaaatgaaaacactaatgttgaaacacttgctgcagtttcaaccctat |
31599564 |
T |
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| Q |
137 |
tcaaccattcatttagacatgcacaatgtagcacaggaaaaacaagcaacatcgattgtcctttctttttcacaaacaatcaaatgtagaaggtgttatg |
236 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31599563 |
tcaaccattcatttagacatacacaatgtagcacaggaaaaacaagcaacatcgattctcctttctttttcacaaacaatcaaatgtagaaggtgttatg |
31599464 |
T |
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| Q |
237 |
agagttcatttgttaggagaagctgctaaagttgataaaacaccacatagagcatgtgaaaag |
299 |
Q |
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| T |
31599463 |
agagttcatttgttaggagaagctgcaaaagttgataaaacaccacatagagcatgtgaaaag |
31599401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 325 - 439
Target Start/End: Complemental strand, 31599407 - 31599293
Alignment:
| Q |
325 |
tgaaaagcaaagagagcttgatgatgaatatgtgagcacttttagacttaaagccgtgaacaatggagattctataagttattcagaaaaagaagttcat |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31599407 |
tgaaaagcaaagagagcttgatgatgaatatgtgagcacttttagacttaaagccgtgaacaatggagattctataagttattcagaaaaagaagttcat |
31599308 |
T |
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| Q |
425 |
actagtgatgatatt |
439 |
Q |
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| T |
31599307 |
actagtgatgatatt |
31599293 |
T |
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