View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19917_low_13 (Length: 432)

Name: NF19917_low_13
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19917_low_13
NF19917_low_13
[»] chr6 (21 HSPs)
chr6 (1-416)||(33058140-33058552)
chr6 (5-416)||(33263212-33263619)
chr6 (77-416)||(31561983-31562318)
chr6 (78-416)||(33286123-33286457)
chr6 (78-416)||(33359297-33359627)
chr6 (91-416)||(33272381-33272698)
chr6 (115-416)||(33305061-33305358)
chr6 (252-416)||(33410540-33410703)
chr6 (78-329)||(9167431-9167678)
chr6 (115-237)||(33401373-33401495)
chr6 (70-250)||(33643772-33643953)
chr6 (237-416)||(33399604-33399785)
chr6 (309-416)||(33388647-33388752)
chr6 (313-416)||(33643994-33644097)
chr6 (331-416)||(28869610-28869695)
chr6 (78-235)||(33388796-33388953)
chr6 (131-228)||(33410701-33410798)
chr6 (1-41)||(33286491-33286531)
chr6 (4-41)||(31561898-31561935)
chr6 (1-41)||(9167706-9167746)
chr6 (1-41)||(33359655-33359695)
[»] chr2 (1 HSPs)
chr2 (5-416)||(17439925-17440326)
[»] scaffold1408 (2 HSPs)
scaffold1408 (261-416)||(1230-1387)
scaffold1408 (86-233)||(1385-1532)
[»] scaffold0428 (2 HSPs)
scaffold0428 (261-416)||(6976-7133)
scaffold0428 (86-233)||(7131-7278)
[»] chr4 (7 HSPs)
chr4 (105-228)||(31157995-31158118)
chr4 (114-228)||(31484022-31484136)
chr4 (182-228)||(31491065-31491111)
chr4 (112-237)||(31149112-31149237)
chr4 (115-176)||(31478188-31478249)
chr4 (309-361)||(31471904-31471956)
chr4 (77-225)||(31503300-31503448)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 33058552 - 33058140
Alignment:
Q  1 acacttgtcaaaaatgagtaatctcagattgctcttcatcaggtaccgaatttcaacgatgttaggattcccaagctgtctttcgaacaaattaagattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33058552 acacttgtcaaaaatgagtaatctcagattgctcttcatcgccaactatatttcaacgatgttaggattcccaagctgtctttcgaacaaattaagattt 33058453  T
Q  101 gttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactat 200  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  | | |||||||||| ||||||||    
T  33058452 gttcactggtttagatatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgacggagagcaacattaaacaactat 33058353  T
Q  201 ggaaaaacaagaaggtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaa 300  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33058352 ggaaaaacaagaaggtactataaattctattattatta---atatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaa 33058256  T
Q  301 tgactaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacataatagattttgga 400  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  33058255 tggctaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtcactccagaaatctagaaaagataatagattttgga 33058156  T
Q  401 gagttcccgaatcttg 416  Q
    ||||||||||||||||    
T  33058155 gagttcccgaatcttg 33058140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 416
Target Start/End: Complemental strand, 33263619 - 33263212
Alignment:
Q  5 ttgtcaaaaatgagtaatctcagattgctcttcatcaggtaccgaatttcaacgatgttaggattcccaagctgtctttcgaacaaattaagatttgttc 104  Q
    |||||||||||||||||||| ||||||||| ||||||||||| |||| |  |   | | ||||  |||||| |||||||| |||||||| |||| ||||     
T  33263619 ttgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtata---tctcaggaagcccaagttgtctttcaaacaaattgagatatgttg 33263523  T
Q  105 agtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaa 204  Q
    |||||| |  ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33263522 agtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaa 33263423  T
Q  205 aaacaagaaggtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaatg-- 302  Q
    |||||||||||||||||||||||   | |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||||||||      
T  33263422 aaacaagaaggtactataaattc---tcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatcaaagtaatggc 33263326  T
Q  303 actaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacataatagattttggaga 402  Q
     |||  ||| ||| || |||| |||||||||||| |||||||||||||||||||||||| || ||||||   | |||||||| |||||||||||||||||    
T  33263325 tctatttttattgtttattcatgtcacagtatctgcccaatttgagaacattggatctaagtcactccatcgagctagaaaagataatagattttggaga 33263226  T
Q  403 gttcccgaatcttg 416  Q
    |||||| |||||||    
T  33263225 gttcccaaatcttg 33263212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 77 - 416
Target Start/End: Original strand, 31561983 - 31562318
Alignment:
Q  77 tgtctttcgaacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttgg 176  Q
    |||||||||||||||||||||| |||| ||||| ||  |||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  31561983 tgtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttgg 31562082  T
Q  177 tgaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaa 276  Q
     || ||||| |||||| |||||||||| ||||||||||||||| |||||| | ||||||||| ||      || ||||||||| ||||||||||||  ||    
T  31562083 cgagaagcagcattacgcaactatggacaaacaagaaggtactgtaaattatcttattattacta------attatcttagaactataaacaaattagaa 31562176  T
Q  277 acaattctcttacaatcaaagtaatg--actaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaa 374  Q
    |||||| ||||  |||||||||||||   |||  |||||| |||||| | ||||||||||||||||||||| |||| |||||||||| || |||||| ||    
T  31562177 acaattatcttttaatcaaagtaatggctctatttttgtttgttttttatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataa 31562276  T
Q  375 atctagaaaacataatagattttggagagttcccgaatcttg 416  Q
    |||| | ||| |||||||||||||||| ||||||||||||||    
T  31562277 atcttgtaaagataatagattttggagcgttcccgaatcttg 31562318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 78 - 416
Target Start/End: Complemental strand, 33286457 - 33286123
Alignment:
Q  78 gtctttcgaacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggt 177  Q
    ||||||| ||||||||||||| ||||||||||  | ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||      
T  33286457 gtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgca 33286358  T
Q  178 gaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaa 277  Q
     |  |||||||||| ||||||||||| ||| ||||||||||||||||||    | ||||||| ||| |   ||||||||||||||||||||||||  |||    
T  33286357 tagtagcaacattaaacaactatggagaaagaagaaggtactataaatt---atcttattataaatgt---tcatcttagaaatataaacaaatttgaaa 33286264  T
Q  278 caattctcttacaatcaaagtaatgact--aactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaa 375  Q
    ||||||||||| ||||||| ||||| ||  |  |||||| ||||||||  | |||||||||||||||||||||   ||||||||||||  |||||| |||    
T  33286263 caattctcttaaaatcaaattaatggctccatttttgtttgtttttcatattacagtatcttcccaatttgaggggattggatctacgatactccaaaaa 33286164  T
Q  376 tctagaaaacataatagattttggagagttcccgaatcttg 416  Q
     |||| ||| ||| ||||||| |||||||||||||||||||    
T  33286163 actagtaaagatagtagatttcggagagttcccgaatcttg 33286123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 78 - 416
Target Start/End: Complemental strand, 33359627 - 33359297
Alignment:
Q  78 gtctttcgaacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggt 177  Q
    ||||||| |||  |||||||||| |||||||||    |||||||| | ||||||||||| ||| |||| || ||||||||||||||||||||||||||      
T  33359627 gtctttcaaacgcattaagatttattcagtgggaggcatatccttgccagtatttgccaacaagttttaactccaatgaacttgtagaattgatcttgaa 33359528  T
Q  178 gaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaa 277  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||||   || |||||    |||||||||||||| |||| ||||    
T  33359527 gaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaattctcttattatta---atgtttatt---ttagaaatataaaccaattgaaaa 33359434  T
Q  278 caattctcttacaatcaaagtaatga-ctaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaat 376  Q
     |||| ||||  |||||||| ||||  |||  |||||||||||| || ||||||||||||||||||||||||||||||||||||| || |||||| | |     
T  33359433 taattatcttttaatcaaagcaatgctctagttttgttggtttt-catgtcacagtatcttcccaatttgagaacattggatctaagtaactccaaagag 33359335  T
Q  377 ctagaaaacataatagattttggagagttcccgaatcttg 416  Q
    |||||||| |||| ||||||||  ||||||||||||||||    
T  33359334 ctagaaaagataacagattttg--gagttcccgaatcttg 33359297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 91 - 416
Target Start/End: Complemental strand, 33272698 - 33272381
Alignment:
Q  91 attaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacatt 190  Q
    |||||||| |||| |||||| | ||||||||| ||||| | | ||| ||| |||| |||||||||| ||| |||||||||||||| |||| ||| ||||     
T  33272698 attaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatc 33272599  T
Q  191 acacaactatggaaaaacaagaaggta-ctataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttac 289  Q
    | ||||||||||||||||||||||||| ||||||||||      |||||||||| |||   ||||||||||||||||||||||  ||||||||||||||     
T  33272598 aaacaactatggaaaaacaagaaggtacctataaattc------tattattaatgttt---atcttagaaatataaacaaatttgaaacaattctcttag 33272508  T
Q  290 aatcaaagtaatg--actaactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacat 387  Q
    |||||| ||||||   |||  ||||||  ||||||| ||  |||||||||||||||||||||| ||||| |||| || |||||||||| |||  ||| ||    
T  33272507 aatcaatgtaatggttctatttttgttattttttcatgt--cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactattaaagat 33272410  T
Q  388 aatagattttggagagttcccgaatcttg 416  Q
      |||||||||||||||||||||||||||    
T  33272409 tgtagattttggagagttcccgaatcttg 33272381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 115 - 416
Target Start/End: Complemental strand, 33305358 - 33305061
Alignment:
Q  115 atatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaag 214  Q
    ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||   ||  ||||| |||  ||||||||||| ||||||||||    
T  33305358 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaag 33305259  T
Q  215 gtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaat--gactaactttg 312  Q
    |||||||||||||| |||||||||   || ||||||   ||||||||||||||||| |  |||||||| ||| | | ||||||||||  |  ||  ||||    
T  33305258 gtactataaattctcttattatta---atgtttatc---ttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtatttttg 33305165  T
Q  313 ttggtttttcacgtcacagtatcttcccaatttgagaaca-ttggatctacgtgactccagaaatctagaaaacataatagattttggagagttcccgaa 411  Q
    || ||||| || ||| |||||||| |||||||||| |||| ||||||||| |  |||||  | | |||| ||| ||| |||||||||| |||||||||||    
T  33305164 tttgttttacatgtcccagtatctgcccaatttga-aacatttggatctaagacactccttagaactagtaaagatactagattttggggagttcccgaa 33305066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 252 - 416
Target Start/End: Complemental strand, 33410703 - 33410540
Alignment:
Q  252 tcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaatg--actaactttgttggtttttcacgtcacagtatcttcccaatttgaga 349  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||||   |||  |||||| | |||||| |||||||||| |||||||||||| |    
T  33410703 tcttagagatataaacaaattcaaaacaattctgttataatcaaagtaatgtctctatttttgtttgcttttcatgtcacagtattttcccaatttgaaa 33410604  T
Q  350 acattggatctacgtgactccagaaatctagaaaacataatagattttggagagttcccgaatcttg 416  Q
     ||||||||||| ||||||||| ||   ||||||| |||||||||||||||||||||||||||||||    
T  33410603 gcattggatctaagtgactccaaaa---tagaaaagataatagattttggagagttcccgaatcttg 33410540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 78 - 329
Target Start/End: Complemental strand, 9167678 - 9167431
Alignment:
Q  78 gtctttcgaacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggt 177  Q
    ||||||||||| ||||||||| | || |||||  | ||||||||| ||||||||||||||| | |||| || |||||||||||||| || ||||||||      
T  9167678 gtctttcgaacgaattaagatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactgatcttgaa 9167579  T
Q  178 gaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaa 277  Q
        |||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||||      |||||    |||||||||||||||||||| |||    
T  9167578 ctggagcaacattaaacaactatggaaaaacaaaaaggtactataaactctcttattattaccg---tttatt---ttagaaatataaacaaattcgaaa 9167485  T
Q  278 caattctcttacaatcaaagtaatg--actaactttgttggtttttcacgtcac 329  Q
    ||||| |||||||||||||||||||   |||  ||||||||||||||| |||||    
T  9167484 caattttcttacaatcaaagtaatggctctatttttgttggtttttcatgtcac 9167431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 33401495 - 33401373
Alignment:
Q  115 atatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaag 214  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||||||||||||||||||||  |   |||||||||| ||||||||||||||||||||||    
T  33401495 atatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtggtgtagcaacattaaacaactatggaaaaacaagaag 33401396  T
Q  215 gtactataaattctattattatt 237  Q
    |||||||||||||| ||||||||    
T  33401395 gtactataaattctcttattatt 33401373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 70 - 250
Target Start/End: Original strand, 33643772 - 33643953
Alignment:
Q  70 cccaagctgtctttcgaacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattg 169  Q
    |||||| |||||||| ||  ||||||||| |||| | |||  ||  ||||||| || || |||||||||||||||| | |||||| ||||||||||||||    
T  33643772 cccaagttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattg 33643871  T
Q  170 atcttggtgaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctattat-tattattaatatttatc 250  Q
     |||||  ||| |||||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||    
T  33643872 ttcttgaagaagagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttatatattattaatgtttatc 33643953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 237 - 416
Target Start/End: Complemental strand, 33399785 - 33399604
Alignment:
Q  237 tattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaatg--actaactttgttggtttttcacgtcacagtat 334  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||   ||   ||| ||| ||  ||| ||||||||||    
T  33399785 tattgatatttatcatcttagaaatataaacaaattcgaaacaattcttttataatcaaagtaatgtctctgtttttattgtttaatcatgtcacagtat 33399686  T
Q  335 cttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacataatagattttggagagttcccgaatcttg 416  Q
    |||| ||||||| ||| ||||||||||   |  || | |||||||||||| ||||||||||||||||||||||| |||||||    
T  33399685 cttcgcaatttgcgaaaattggatctaatgggttcaataaatctagaaaagataatagattttggagagttcccaaatcttg 33399604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 416
Target Start/End: Complemental strand, 33388752 - 33388647
Alignment:
Q  309 tttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacataatagattttggagagttccc 408  Q
    ||||||| ||||||| ||||  |||||||||||||||||||| |||||||||| |  ||||||||||||||||||| ||| |||||||||||||||||||    
T  33388752 tttgttgttttttcatgtca--gtatcttcccaatttgagaagattggatctaagacactccagaaatctagaaaagatagtagattttggagagttccc 33388655  T
Q  409 gaatcttg 416  Q
    ||||||||    
T  33388654 gaatcttg 33388647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 313 - 416
Target Start/End: Original strand, 33643994 - 33644097
Alignment:
Q  313 ttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacataatagattttggagagttcccgaat 412  Q
    |||| |||||| ||||||||||||||||||| |||||| ||||||| || |||| || ||||| |||||||| |||||||||||||||||||||||||||    
T  33643994 ttggcttttcatgtcacagtatcttcccaatctgagaagattggatttaagtgattctagaaagctagaaaagataatagattttggagagttcccgaat 33644093  T
Q  413 cttg 416  Q
    ||||    
T  33644094 cttg 33644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 28869610 - 28869695
Alignment:
Q  331 gtatcttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacataatagattttggagagttcccgaatcttg 416  Q
    ||||||||||||||||||||||||| ||||| || ||||||| ||||||||||| ||||||||||||||||||||||| |||||||    
T  28869610 gtatcttcccaatttgagaacattgcatctaagtcactccagcaatctagaaaagataatagattttggagagttcccaaatcttg 28869695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 33388953 - 33388796
Alignment:
Q  78 gtctttcgaacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggt 177  Q
    ||||||| |||| |||||||| |||| |||||  |   ||||||| ||||||||||||||||| |||| |||||| ||| |||||||| ||||||||| |    
T  33388953 gtctttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatcttgat 33388854  T
Q  178 gaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctattatta 235  Q
    | | ||| |||| | |||||||||||| |||||||||||| |||| |||  |||||||    
T  33388853 gtatagcgacatcaaacaactatggaagaacaagaaggtattatacatttgattatta 33388796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 33410798 - 33410701
Alignment:
Q  131 ttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaaggtactataaattct 228  Q
    ||||||| || |||| |||| ||||||||||| ||||||||||||  ||| |||| | | | |||||||||||||| |||||||||||||||||||||    
T  33410798 ttgccattaagttttcaccctaatgaacttgttgaattgatcttgaagaatagcagcttcaaacaactatggaaaagcaagaaggtactataaattct 33410701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33286531 - 33286491
Alignment:
Q  1 acacttgtcaaaaatgagtaatctcagattgctcttcatca 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  33286531 acacttgtcaaaaatgagtaatcttagattgctcatcatca 33286491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 31561898 - 31561935
Alignment:
Q  4 cttgtcaaaaatgagtaatctcagattgctcttcatca 41  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  31561898 cttgtcaaaaatgagtaatcttagattgctcatcatca 31561935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9167746 - 9167706
Alignment:
Q  1 acacttgtcaaaaatgagtaatctcagattgctcttcatca 41  Q
    |||||||||||||||||||| ||| ||||||||| ||||||    
T  9167746 acacttgtcaaaaatgagtagtcttagattgctcatcatca 9167706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33359695 - 33359655
Alignment:
Q  1 acacttgtcaaaaatgagtaatctcagattgctcttcatca 41  Q
    |||||||||||||||||||||||| ||| ||||| ||||||    
T  33359695 acacttgtcaaaaatgagtaatcttagagtgctcatcatca 33359655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 5 - 416
Target Start/End: Original strand, 17439925 - 17440326
Alignment:
Q  5 ttgtcaaaaatgagtaatctcagattgctcttcatcaggtaccgaatttcaacgatgttaggattcccaagctgtctttcgaacaaattaagatttgttc 104  Q
    |||||||||||||||||||| ||||||||| |||||    |||  | | |||| || | |||||||||||| |||||||||||||||||||||| ||||     
T  17439925 ttgtcaaaaatgagtaatcttagattgctcatcatcgtcaaccatactgcaactatctcaggattcccaagttgtctttcgaacaaattaagatatgttg 17440024  T
Q  105 agtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaa 204  Q
    |||||  || |||||||| ||||||||||||| ||| |||| ||||||||||||| ||||||||||| ||||     |||||||||| | | ||||||||    
T  17440025 agtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttggatgggagcaacattaaaaacctatggaa 17440124  T
Q  205 aaacaagaaggtactataaattctattattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaatgac 304  Q
    |||||||||||||| ||||||||| ||||||  |||||| |||   ||||| ||||||||||||||||| |||||||| ||||| |||||| |||||| |    
T  17440125 aaacaagaaggtaccataaattctcttatta--attaatgttt---atctttgaaatataaacaaattcgaaacaattttcttataatcaatgtaatggc 17440219  T
Q  305 taactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatctacgtgactccagaaatctagaaaacataatagattttggagagt 404  Q
    |   |||     ||||| | |||||||||||||||||||||||||| |||||||||| ||||||| ||||| |||||||| ||||| |||||||||||||    
T  17440220 tctattt-----ttttttatgtcacagtatcttcccaatttgagaagattggatctaagtgactctagaaagctagaaaagataatggattttggagagt 17440314  T
Q  405 tcccgaatcttg 416  Q
    |||| |||||||    
T  17440315 tcccaaatcttg 17440326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 416
Target Start/End: Complemental strand, 1387 - 1230
Alignment:
Q  261 tataaacaaattcaaaacaattctcttacaatcaaagtaatgac--taactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggat 358  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||  ||  ||||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  1387 tataaacaaattcaaaaaaattctcttacaatcgaagtaatgaccctatttttgttggtttttcatgtcacagcatcttcccaatttgagaagattggat 1288  T
Q  359 ctacgtgactccagaaatctagaaaacataatagattttggagagttcccgaatcttg 416  Q
    ||| |||||||||  || |||||||| |||  |||||||||| |||| || |||||||    
T  1287 ctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttg 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 1532 - 1385
Alignment:
Q  86 aacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagca 185  Q
    ||||||||| ||| |||||| |||  | ||||||||| ||||||| ||||||||| |||| ||||   |||||||||||||||||| ||||||| ||||     
T  1532 aacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagct 1433  T
Q  186 acattacacaactatggaaaaacaagaaggtactataaattctattat 233  Q
     ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  1432 gcattaaacaactatggaaaaacaagaaggtactataaattctcttat 1385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 261 - 416
Target Start/End: Complemental strand, 7133 - 6976
Alignment:
Q  261 tataaacaaattcaaaacaattctcttacaatcaaagtaatgac--taactttgttggtttttcacgtcacagtatcttcccaatttgagaacattggat 358  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||  ||  ||||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  7133 tataaacaaattcaaaaaaattctcttacaatcgaagtaatgaccctatttttgttggtttttcatgtcacagcatcttcccaatttgagaagattggat 7034  T
Q  359 ctacgtgactccagaaatctagaaaacataatagattttggagagttcccgaatcttg 416  Q
    ||| |||||||||  || |||||||| |||  |||||||||| |||| || |||||||    
T  7033 ctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttg 6976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 7278 - 7131
Alignment:
Q  86 aacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagca 185  Q
    ||||||||| ||| |||||| |||  | ||||||||| ||||||| ||||||||| |||| ||||   |||||||||||||||||| ||||||| ||||     
T  7278 aacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagct 7179  T
Q  186 acattacacaactatggaaaaacaagaaggtactataaattctattat 233  Q
     ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  7178 gcattaaacaactatggaaaaacaagaaggtactataaattctcttat 7131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 31158118 - 31157995
Alignment:
Q  105 agtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaa 204  Q
    |||||| ||||||||||| ||||||||||||| ||  |||| | |||||| ||||||| ||||||||| ||  | | |||| | | | ||||||||||||    
T  31158118 agtggggtagatatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaa 31158019  T
Q  205 aaacaagaaggtactataaattct 228  Q
    | ||||||||||||||||||||||    
T  31158018 agacaagaaggtactataaattct 31157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 31484022 - 31484136
Alignment:
Q  114 gatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaa 213  Q
    ||||||||| || |||||||||||||||||||   |||||| ||||||| ||||||||| ||||| | |||| ||| | |||||| ||| ||  ||||||    
T  31484022 gatatcctttcatgtatttgccatcaaattttcggcccaatcaacttgttgaattgatcatggtggatagcagcatcaaacaactctgggaaggcaagaa 31484121  T
Q  214 ggtactataaattct 228  Q
    ||||||||| |||||    
T  31484122 ggtactatatattct 31484136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 31491065 - 31491111
Alignment:
Q  182 agcaacattacacaactatggaaaaacaagaaggtactataaattct 228  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  31491065 agcagcatcacacaactatggaaagacaagaaggtactataaattct 31491111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 31149237 - 31149112
Alignment:
Q  112 tagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaag 211  Q
    ||||||||||| ||||||||||||||||| ||||   || ||| ||||||| ||||||||||||  | | ||||   | | ||| ||||||||| | |||    
T  31149237 tagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatcttgaggtatagcagtgtcaaacagctatggaaagataag 31149138  T
Q  212 aaggtactataaattctattattatt 237  Q
    ||||||||||| ||||| || |||||    
T  31149137 aaggtactatacattctctttttatt 31149112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 31478188 - 31478249
Alignment:
Q  115 atatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttgg 176  Q
    |||||||| ||||||||||||||| | ||||||| | ||| ||||||| |||||||||||||    
T  31478188 atatcctttcaagtatttgccatcgagttttgactctaatcaacttgttgaattgatcttgg 31478249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 31471904 - 31471956
Alignment:
Q  309 tttgttggtttttcacgtcacagtatcttcccaatttgagaacattggatcta 361  Q
    ||||||| ||||||| |||||||||||| |||||||||||||  |||||||||    
T  31471904 tttgttgatttttcatgtcacagtatctgcccaatttgagaaatttggatcta 31471956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 31503300 - 31503448
Alignment:
Q  77 tgtctttcgaacaaattaagatttgttcagtgggttagatatccttccaagtatttgccatcaaattttgaccccaatgaacttgtagaattgatcttgg 176  Q
    |||||||| ||| ||||||||| |||| | |||  |  |||||||| |||||||||||| |||| |||| | || ||| ||||||| || |||||||||     
T  31503300 tgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttga 31503399  T
Q  177 tgaaaagcaacattacacaactatggaaaaacaagaaggtactataaat 225  Q
     ||  |||| |||   |||| ||||| || ||||||||||||| |||||    
T  31503400 agagtagcagcatcgaacaattatgggaagacaagaaggtactctaaat 31503448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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