View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19917_low_15 (Length: 412)

Name: NF19917_low_15
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19917_low_15
NF19917_low_15
[»] chr1 (9 HSPs)
chr1 (16-350)||(48417479-48417813)
chr1 (309-361)||(23398413-23398466)
chr1 (310-361)||(45115263-45115315)
chr1 (315-361)||(24981934-24981981)
chr1 (312-361)||(3013703-3013753)
chr1 (313-361)||(8338673-8338722)
chr1 (322-361)||(14967318-14967358)
chr1 (310-361)||(33939390-33939442)
chr1 (310-361)||(46412698-46412750)
[»] chr2 (18 HSPs)
chr2 (308-360)||(11726489-11726541)
chr2 (309-361)||(13994283-13994335)
chr2 (309-361)||(13988385-13988437)
chr2 (309-361)||(8510598-8510651)
chr2 (310-361)||(15119772-15119824)
chr2 (310-361)||(26003430-26003482)
chr2 (310-361)||(38465784-38465836)
chr2 (310-360)||(27331853-27331904)
chr2 (309-361)||(11726588-11726641)
chr2 (309-361)||(13882776-13882829)
chr2 (309-361)||(14022901-14022954)
chr2 (308-360)||(14308740-14308793)
chr2 (322-361)||(1961402-1961442)
chr2 (310-361)||(15119870-15119922)
chr2 (310-361)||(21183420-21183472)
chr2 (310-361)||(26234117-26234169)
chr2 (322-361)||(31024178-31024218)
chr2 (310-361)||(42530585-42530637)
[»] chr7 (10 HSPs)
chr7 (309-361)||(5950287-5950340)
chr7 (310-361)||(10095714-10095766)
chr7 (310-361)||(25245236-25245288)
chr7 (310-361)||(2943207-2943259)
chr7 (310-361)||(6455544-6455596)
chr7 (316-361)||(3882904-3882949)
chr7 (310-358)||(43103067-43103116)
chr7 (310-361)||(8447810-8447862)
chr7 (322-361)||(23818431-23818471)
chr7 (310-361)||(41404010-41404062)
[»] chr3 (17 HSPs)
chr3 (309-394)||(52215936-52216026)
chr3 (310-361)||(331891-331943)
chr3 (309-358)||(7882275-7882325)
chr3 (310-361)||(8504845-8504897)
chr3 (309-361)||(54595883-54595935)
chr3 (310-361)||(42930110-42930160)
chr3 (310-359)||(9170107-9170157)
chr3 (308-361)||(30519691-30519745)
chr3 (308-361)||(38677558-38677612)
chr3 (309-357)||(7829140-7829189)
chr3 (309-361)||(12744994-12745047)
chr3 (309-361)||(27224574-27224627)
chr3 (313-361)||(40639802-40639851)
chr3 (309-361)||(48191709-48191762)
chr3 (313-360)||(12744899-12744947)
chr3 (310-361)||(22496946-22496998)
chr3 (322-361)||(54595797-54595837)
[»] chr8 (9 HSPs)
chr8 (310-361)||(10934696-10934748)
chr8 (308-360)||(10117064-10117117)
chr8 (309-361)||(27518408-27518461)
chr8 (310-361)||(1662670-1662722)
chr8 (309-361)||(7484612-7484664)
chr8 (310-361)||(7484710-7484762)
chr8 (310-361)||(11295659-11295711)
chr8 (310-361)||(13496528-13496580)
chr8 (306-361)||(33070258-33070314)
[»] chr4 (8 HSPs)
chr4 (312-361)||(23568473-23568523)
chr4 (310-361)||(14450952-14451004)
chr4 (310-361)||(54713093-54713145)
chr4 (313-361)||(19878145-19878194)
chr4 (305-361)||(53176298-53176355)
chr4 (309-360)||(36786144-36786196)
chr4 (310-361)||(47308109-47308161)
chr4 (309-361)||(55935982-55936034)
[»] chr5 (6 HSPs)
chr5 (310-358)||(10437733-10437782)
chr5 (310-361)||(14772543-14772595)
chr5 (310-361)||(43117381-43117433)
chr5 (310-360)||(15549419-15549470)
chr5 (313-360)||(11795734-11795782)
chr5 (310-361)||(26141750-26141802)
[»] chr6 (11 HSPs)
chr6 (317-361)||(14031672-14031716)
chr6 (309-361)||(15517085-15517137)
chr6 (310-361)||(26527185-26527237)
chr6 (306-361)||(31398319-31398375)
chr6 (309-361)||(34379730-34379782)
chr6 (315-361)||(26527283-26527330)
chr6 (309-361)||(6560750-6560803)
chr6 (310-361)||(8146042-8146094)
chr6 (310-361)||(18886303-18886355)
chr6 (310-361)||(32254914-32254966)
chr6 (322-361)||(34379828-34379868)
[»] scaffold0149 (1 HSPs)
scaffold0149 (311-361)||(24699-24750)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 48417479 - 48417813
Alignment:
Q  16 ataatcattctagttaaatataagaattttaatgcatgaaaaatagggacgcagcattacttacattttggtgttcgggtggaaaaagctttagacattc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48417479 ataatcattctagttaaatataagaattttaatgcatgaaaaatagggacgcagcattacttacattttggtgttcgggtggaaaaagctttagacattc 48417578  T
Q  116 aacaataacataactgccattaaaatttttcatcaatgcaacagtgatatgcttcatggtatacacaactacatattgcatgaacagacacttaatattc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48417579 aacaataacataactgccattaaaatttttcatcaatgcaacagtgatatgcttcatggtatacacaactacatattgcatgaacagacacttaatattc 48417678  T
Q  216 ttcagcattatctgcataacgcgagttctgcaaaaagaataaaatagaattacacaatttaattaagagaataaaatttaaatctaatggtttgtacacc 315  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48417679 ttcagcattatctgcataacgcgagttctacaaaataaataaaatagaattacacaatttaattaagagaataaaatttaaatctaatggtttgaacacc 48417778  T
Q  316 ctccgctcacaattataagcaaaaataacatttta 350  Q
    |||||||||||||||||||||||||||||||||||    
T  48417779 ctccgctcacaattataagcaaaaataacatttta 48417813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 23398413 - 23398466
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  23398413 gtacaccctccggtcactattataagcaaaaactaacattttagattcattcat 23398466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 45115315 - 45115263
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  45115315 tacaccctccggtcactattataagcaaaaatctacattttagattcattcat 45115263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 24981981 - 24981934
Alignment:
Q  315 cctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  24981981 cctccggtcactattataagcaaaaatcaacattttagattcattcat 24981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 3013753 - 3013703
Alignment:
Q  312 caccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  3013753 caccctccggtcactattataagcaaaaattaacattttacattcattcat 3013703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 8338673 - 8338722
Alignment:
Q  313 accctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  8338673 accctccggtcactattataagcaaaaatctacattttagattcattcat 8338722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 14967358 - 14967318
Alignment:
Q  322 tcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  14967358 tcactattataagcaaaaatcaacattttagattcattcat 14967318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 33939442 - 33939390
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  33939442 tacaccctccggtcactattataagcaaaagtttacattttagattcattcat 33939390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 46412698 - 46412750
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||| |||| |||| |||||||||||||| ||| |||||||||||||||||    
T  46412698 tacaccatccgatcactattataagcaaaaattaatattttagattcattcat 46412750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 11726489 - 11726541
Alignment:
Q  308 tgtacaccctccgctcacaattataagcaaaaataacattttagattcattca 360  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  11726489 tgtacaccctccggtcactattataagcaaaaataacattttagattcattca 11726541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 13994335 - 13994283
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  13994335 gtacaccctccggtcactattataagcaaaactaacattttagattcattcat 13994283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 13988437 - 13988385
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    |||||||||||| |||| |||||||| |||| |||||||||||||||||||||    
T  13988437 gtacaccctccggtcactattataagtaaaactaacattttagattcattcat 13988385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 8510651 - 8510598
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||||||| |||| |||||||||||||| ||||||||| |||||||||||    
T  8510651 gtacaccctccggtcactattataagcaaaaactaacattttggattcattcat 8510598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 15119772 - 15119824
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||| || |||| ||||||||||||||| ||||||||||||||||||||    
T  15119772 tacacccttcggtcactattataagcaaaaattaacattttagattcattcat 15119824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 26003430 - 26003482
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||||||||||||||||||| || ||||||| |||||||||    
T  26003430 tacaccctccggtcacaattataagcaaaaatcaatattttaggttcattcat 26003482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 38465784 - 38465836
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||    
T  38465784 tacaccctccggtcactattataagcaaaaatcaacattttagattaattcat 38465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 27331904 - 27331853
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattca 360  Q
    |||| |||||| |||| ||||||||||||||| |||||||||||||||||||    
T  27331904 tacatcctccggtcactattataagcaaaaatcaacattttagattcattca 27331853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 11726641 - 11726588
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||| |||||  |||| ||||||||||||||| ||||||||||||||||||||    
T  11726641 gtacatcctccagtcactattataagcaaaaattaacattttagattcattcat 11726588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 13882829 - 13882776
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||||||  |||| ||||||| |||||| |||||||||||||||||||||    
T  13882829 gtacaccctcccgtcactattataaacaaaaactaacattttagattcattcat 13882776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 14022954 - 14022901
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||||||  |||| ||||||| |||||| |||||||||||||||||||||    
T  14022954 gtacaccctcctgtcactattataatcaaaaactaacattttagattcattcat 14022901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 14308793 - 14308740
Alignment:
Q  308 tgtacaccctccgctcacaattataagca-aaaataacattttagattcattca 360  Q
    ||||||||||||| |||||| |||||||| ||||| | ||||||||||||||||    
T  14308793 tgtacaccctccgatcacaaatataagcaaaaaatcatattttagattcattca 14308740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 1961442 - 1961402
Alignment:
Q  322 tcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  1961442 tcactattataagcaaaaatcaacattttagattcattcat 1961402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 15119922 - 15119870
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||| ||||||    
T  15119922 tacaccctccggtcactattataagcaaaaatctacattttagatttattcat 15119870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 21183472 - 21183420
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||| |||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  21183472 tacatcctccggtcactgttataagcaaaaatcaacattttagattcattcat 21183420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 26234169 - 26234117
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  26234169 tacaccctccggtcactattataagcaaaagtttacattttagattcattcat 26234117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 31024178 - 31024218
Alignment:
Q  322 tcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  31024178 tcactattataagcaaaaatcaacattttagattcattcat 31024218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 42530637 - 42530585
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  42530637 tacactctccggtcactattataagcaaaaattaacattttacattcattcat 42530585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 5950340 - 5950287
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  5950340 gtacaccctccggtcactattataagcaaaaactaacattttagattcattcat 5950287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 10095714 - 10095766
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  10095714 tacaccctccggtcactattataagcaaaaattaacattttagattcattcat 10095766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 25245288 - 25245236
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  25245288 tacaccctccggtcactattataagcaaaaatcaacattttagattcattcat 25245236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 2943207 - 2943259
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||| || |||| ||||||||||||||| ||||||||||||||||||||    
T  2943207 tacacccttcggtcactattataagcaaaaatcaacattttagattcattcat 2943259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 6455544 - 6455596
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  6455544 tacaccctccgatcactattataagcaaaaatttacattttagattcattcat 6455596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 3882949 - 3882904
Alignment:
Q  316 ctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    ||||| |||||||||||| |||||  ||||||||||||||||||||    
T  3882949 ctccggtcacaattataaccaaaatcaacattttagattcattcat 3882904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 43103067 - 43103116
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcatt 358  Q
    ||||||||||| |||| |||||||||||||| |||||||||| |||||||    
T  43103067 tacaccctccggtcactattataagcaaaaattaacattttaaattcatt 43103116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 8447862 - 8447810
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||| || |||| |||||||||||||||  |||||||||||||||||||    
T  8447862 tacacccttcggtcactattataagcaaaaatctacattttagattcattcat 8447810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 23818431 - 23818471
Alignment:
Q  322 tcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  23818431 tcactattataagcaaaaatcaacattttagattcattcat 23818471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 41404010 - 41404062
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||| |||||| |||| |||||||||||||| || ||||||||||||||||||    
T  41404010 tacatcctccggtcactattataagcaaaaattatcattttagattcattcat 41404062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 52216026 - 52215936
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcatca----ttaaatgtggtctataataaagatcatatac 394  Q
    |||||||||||| |||| ||||||||||||||| ||||||||||||||| |||| |     |  |||||||||||||||||||||||||||    
T  52216026 gtacaccctccggtcactattataagcaaaaatcaacattttagattcactcattaaatgatgtatgtggtctataataaagatcatatac 52215936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 331943 - 331891
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  331943 tacaccctccggtcactattataagcaaaaattaacattttagattcattcat 331891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 7882275 - 7882325
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcatt 358  Q
    |||||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  7882275 gtacaccctccggtcactattataagcaaaaattaacattttagattcatt 7882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 8504845 - 8504897
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  8504845 tacaccctccggtcactattataagcaaaaatctacattttagattcattcat 8504897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 54595935 - 54595883
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    |||||||||||| |||| |||||||| |||||||  |||||||||||||||||    
T  54595935 gtacaccctccggtcactattataagtaaaaatataattttagattcattcat 54595883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 42930160 - 42930110
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||||||||    
T  42930160 tacaccctccgatcactattataagcaaaaa-aacattttaaattcattcat 42930110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 9170107 - 9170157
Alignment:
Q  310 tacaccctccgctcacaattataagc-aaaaataacattttagattcattc 359  Q
    ||||||||||| |||| ||||||||| |||||| |||||||||||||||||    
T  9170107 tacaccctccggtcactattataagcaaaaaattacattttagattcattc 9170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 30519745 - 30519691
Alignment:
Q  308 tgtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||| | |||| ||||||||||||||  ||||||||||||||||||||    
T  30519745 tgtacaccctctggtcactattataagcaaaaaccaacattttagattcattcat 30519691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 38677558 - 38677612
Alignment:
Q  308 tgtacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 361  Q
    ||||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  38677558 tgtacaccctccggtcactattataagcaaaagtttacattttagattcattcat 38677612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 7829189 - 7829140
Alignment:
Q  309 gtacaccctccgctcacaattataagc-aaaaataacattttagattcat 357  Q
    |||||||||||| |||| ||||||||| |||| |||||||||||||||||    
T  7829189 gtacaccctccgatcactattataagctaaaattaacattttagattcat 7829140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 12745047 - 12744994
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||| || |||| |||||||||||||| ||||||||||||| |||||||    
T  12745047 gtacacccttcggtcactattataagcaaaaattaacattttagatacattcat 12744994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 27224574 - 27224627
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||||||| |||| ||||||| ||||||| ||||||||||||| ||||||    
T  27224574 gtacaccctccggtcactattataaacaaaaatcaacattttagatttattcat 27224627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 40639851 - 40639802
Alignment:
Q  313 accctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||| |||| |||||||||||||| |||||||||| ||||||||||    
T  40639851 accctccggtcactattataagcaaaaattaacattttaaattcattcat 40639802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 48191709 - 48191762
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||| |||||| |||| ||||||| ||||||| ||||||||||||||||||||    
T  48191709 gtacatcctccggtcactattataaacaaaaattaacattttagattcattcat 48191762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 12744899 - 12744947
Alignment:
Q  313 accctccgctcacaattataagcaaaaa-taacattttagattcattca 360  Q
    |||||||| |||| |||||||||||||| | ||||||||||||||||||    
T  12744899 accctccggtcactattataagcaaaaacttacattttagattcattca 12744947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 22496946 - 22496998
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||  |||| |||||||||||||| ||| |||||||||||||||||    
T  22496946 tacaccctccagtcactattataagcaaaaattaatattttagattcattcat 22496998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 54595797 - 54595837
Alignment:
Q  322 tcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  54595797 tcactattataagcaaaaatcaacattttagattcattcat 54595837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 10934748 - 10934696
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  10934748 tacaccctccggtcactattataagcaaaaatcaacattttagattcattcat 10934696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 10117117 - 10117064
Alignment:
Q  308 tgtacaccctccgctcacaattataagcaaaaa-taacattttagattcattca 360  Q
    |||||||| |||| |||| |||||||||||||| | ||||||||||||||||||    
T  10117117 tgtacaccatccggtcactattataagcaaaaatttacattttagattcattca 10117064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 27518461 - 27518408
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||||||| |||| ||||||| |||||||  |||||||||||||||||||    
T  27518461 gtacaccctccggtcactattataaacaaaaatctacattttagattcattcat 27518408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 1662722 - 1662670
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaata-acattttagattcattcat 361  Q
    ||||| ||||| |||| || ||||||||||||| |||||||||||||||||||    
T  1662722 tacactctccggtcactataataagcaaaaatatacattttagattcattcat 1662670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 7484612 - 7484664
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    |||||||||||| ||||  ||||||||||||| |  |||||||||||||||||    
T  7484612 gtacaccctccggtcactgttataagcaaaaacataattttagattcattcat 7484664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 7484762 - 7484710
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||| || |||  ||||||||||||||| ||||||||||||||||||||    
T  7484762 tacaccctacggtcattattataagcaaaaatcaacattttagattcattcat 7484710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 11295659 - 11295711
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||| |||| |||| ||||||||||||||| |||||||||||| |||||||    
T  11295659 tacaccttccggtcactattataagcaaaaatcaacattttagatacattcat 11295711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 13496580 - 13496528
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||| | |||||||| ||||||||||    
T  13496580 tacaccctccggtcactattataagcaaaaatttacattttaaattcattcat 13496528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 33070314 - 33070258
Alignment:
Q  306 tttgtacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 361  Q
    ||||||||||||||| |||| |||||||||||||  |  ||||||||||||||||||    
T  33070314 tttgtacaccctccggtcactattataagcaaaattttgcattttagattcattcat 33070258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Complemental strand, 23568523 - 23568473
Alignment:
Q  312 caccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  23568523 caccctccggtcactattataagcaaaaactaacattttagattcattcat 23568473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 14450952 - 14451004
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||||  |||||||||||||||||||    
T  14450952 tacaccctccgatcactattataagcaaaaatctacattttagattcattcat 14451004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 54713093 - 54713145
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  54713093 tacaccctccggtcactattataagcaaaaatttacattttagattcattcat 54713145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 19878145 - 19878194
Alignment:
Q  313 accctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||| |||| | ||||||||||||| ||||||||||||||||||||    
T  19878145 accctccggtcactaatataagcaaaaattaacattttagattcattcat 19878194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 53176298 - 53176355
Alignment:
Q  305 gtttgtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||| ||||||||||| |||| |||||||| ||||| |||||||||| ||||||||||    
T  53176298 gtttttacaccctccgatcactattataagtaaaaattaacattttatattcattcat 53176355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 36786144 - 36786196
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaat-aacattttagattcattca 360  Q
    |||||||||||| || | ||||||| ||||||| |||||||||||||||||||    
T  36786144 gtacaccctccggtccctattataaacaaaaatcaacattttagattcattca 36786196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 47308109 - 47308161
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||||| || |||| ||||||||||||||| |||||||| |||||||||||    
T  47308109 tacacccttcgatcactattataagcaaaaatcaacattttggattcattcat 47308161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 55935982 - 55936034
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    ||||| |||||| |||| |||||||||||||| |  |||||||||||||||||    
T  55935982 gtacatcctccggtcactattataagcaaaaacataattttagattcattcat 55936034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 10437782 - 10437733
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcatt 358  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  10437782 tacaccctccggtcactattataagcaaaaatcaacattttagattcatt 10437733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 14772543 - 14772595
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| ||||||||||||||| |||||||||| |||||||||    
T  14772543 tacaccctccggtcactattataagcaaaaatcaacattttaggttcattcat 14772595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 43117381 - 43117433
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||||||    
T  43117381 tacaccctccgatcactattataagcaaaaatcaatattttagattcattcat 43117433  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 15549470 - 15549419
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattca 360  Q
    ||||||||||| |||| ||||||| ||||||| |||||||||||||||||||    
T  15549470 tacaccctccggtcactattataaacaaaaatcaacattttagattcattca 15549419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 11795734 - 11795782
Alignment:
Q  313 accctccgctcacaattataagcaaaaat-aacattttagattcattca 360  Q
    |||||||| |||| | ||||||||||||| |||||||||||||||||||    
T  11795734 accctccggtcactaatataagcaaaaatcaacattttagattcattca 11795782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 26141750 - 26141802
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  26141750 tacaccctccggtcactattataagcaaaagtttacattttagattcattcat 26141802  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 14031672 - 14031716
Alignment:
Q  317 tccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||    
T  14031672 tccggtcactattataagcaaaaataacatcttagattcattcat 14031716  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 15517085 - 15517137
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    |||||||||||| |||| |||||||||||||| |  |||||||||||||||||    
T  15517085 gtacaccctccggtcactattataagcaaaaacataattttagattcattcat 15517137  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 26527185 - 26527237
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  26527185 tacaccctccgatcactattataagcaaaaatcaacattttagatacattcat 26527237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 31398375 - 31398319
Alignment:
Q  306 tttgtacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 361  Q
    ||||||||||||||| |||| |||||||||||||  | |||||||||||||||||||    
T  31398375 tttgtacaccctccggtcactattataagcaaaagtttacattttagattcattcat 31398319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 34379730 - 34379782
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaataacattttagattcattcat 361  Q
    |||||||||||| |||| |||||||||||||| |  |||||||||||||||||    
T  34379730 gtacaccctccggtcactattataagcaaaaacataattttagattcattcat 34379782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 26527330 - 26527283
Alignment:
Q  315 cctccgctcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  26527330 cctccgttcactattataagcaaaaattaacattttagattcattcat 26527283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 6560803 - 6560750
Alignment:
Q  309 gtacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||||||| |||| | |||||||||||| | |||||||||||||||||||    
T  6560803 gtacaccctccggtcactaatataagcaaaaaattacattttagattcattcat 6560750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 8146094 - 8146042
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||| |||| | |||||||||||| | |||||||||||||||||||    
T  8146094 tacaccctccggtcactaatataagcaaaaaattacattttagattcattcat 8146042  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 18886303 - 18886355
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    ||||||||||  |||| |||||||||||||| ||| |||||||||||||||||    
T  18886303 tacaccctccagtcactattataagcaaaaattaatattttagattcattcat 18886355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 32254966 - 32254914
Alignment:
Q  310 tacaccctccgctcacaattataagcaaaa-ataacattttagattcattcat 361  Q
    ||||||||||| |||| |||||||||||||  ||| |||||||||||||||||    
T  32254966 tacaccctccgatcactattataagcaaaagttaatattttagattcattcat 32254914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 34379868 - 34379828
Alignment:
Q  322 tcacaattataagcaaaaat-aacattttagattcattcat 361  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  34379868 tcactattataagcaaaaatcaacattttagattcattcat 34379828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 24750 - 24699
Alignment:
Q  311 acaccctccgctcacaattataagcaaaaa-taacattttagattcattcat 361  Q
    |||||||||| |||| |||||||||||||| ||| |||||||||||||||||    
T  24750 acaccctccggtcactattataagcaaaaattaatattttagattcattcat 24699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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