View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_17 (Length: 395)
Name: NF19917_low_17
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 16695125 - 16694825
Alignment:
| Q |
17 |
atagaggacataagataagcaagcttttgaattttggaatgctacaaataaagatgaaaggaataaatttgaattggatttgaacttgaagcacttattt |
116 |
Q |
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| T |
16695125 |
atagaggacataagataagcaagcttttgaattttggaatgctacaaataaagatgaaaggaataaatttgaattggatttgaacttgaagcacttattt |
16695026 |
T |
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| Q |
117 |
tgcagcataaaatttttgtttactcctggtttgggtcgatatgactccaccccatgttattttatctcttcaacttacaaagtcaaacttaaattgttac |
216 |
Q |
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| T |
16695025 |
tgcagcatacaatttttgtttactcctggtttgggtcgatatgactctaccccatgttattttatctcttcaacttacaaagtcaaacttaaattgttac |
16694926 |
T |
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| Q |
217 |
aacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataatttctttgttgaacttaatttgtatgtgttgttaagaataaattatgt |
316 |
Q |
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| T |
16694925 |
aacttacaatgttttttgttaaaagtttgttaatttatttccttcaaaataatttctttgttgaacttaatttgtatgtgttgtt-agaataaattatgt |
16694827 |
T |
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| Q |
317 |
tg |
318 |
Q |
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|| |
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| T |
16694826 |
tg |
16694825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 16694596 - 16694531
Alignment:
| Q |
320 |
cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat |
385 |
Q |
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| T |
16694596 |
cactttctataaggagtgttttcttcatttgatgcttaaacaaaacctctacatggacccattcat |
16694531 |
T |
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