View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_18 (Length: 394)
Name: NF19917_low_18
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 14328224 - 14328503
Alignment:
| Q |
13 |
aaaattggatgatttgtataaacagtttacaaattttaaattgagatttaactctttcacaccaaaggaatctcaattcactaatggtgagagacactgg |
112 |
Q |
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| T |
14328224 |
aaaattggatgatttgtataaacagtttacaaattttaaattgagatttaactccttcacactaaaggaatctcaattcactaatggtgaga--cactgg |
14328321 |
T |
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| Q |
113 |
acaaaaatttgacattgaagaataccaagaaatctgtgccggaattgatagactagagtcgat--ttcagcttcgtcatttttcaactttatcaacgtct |
210 |
Q |
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| T |
14328322 |
acaaaaatttgacattgaagaataccaagaaatctgtgccggaattgatagactagagtcgatgattcagcttcgtcatttttcaactttatcaacgtct |
14328421 |
T |
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| Q |
211 |
ttccgactattcaacaaatattaagcattgtggtgctgagttatgtaaattgttggacaat-ccaaggctctaagaattgat |
291 |
Q |
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| T |
14328422 |
ttccgactattcaacaaatattaaacattgtggtgctgagttatgtaaattgttggacaatcccaaggctctaagaattgat |
14328503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 14328872 - 14328580
Alignment:
| Q |
13 |
aaaattggatgatttgtataaacagtttacaaattttaaattgagatttaactctttcacaccaaa-ggaatctcaattcactaatggtgagagacactg |
111 |
Q |
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| T |
14328872 |
aaaattggaagatctgtataaacagtttacagattttaaattgagatttaactccttcacactaaaaggaatctcaattcactaatgatgagat----tg |
14328777 |
T |
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| Q |
112 |
gacaaaaatttgacattgaagaataccaagaaatctgtgccggaattgatagactagagtcgat--ttcagcttcgtcatt-----tttcaactttatca |
204 |
Q |
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| T |
14328776 |
gacaaaaatttgacattgaagaataccaaaaaatttatcgcggaattgatagactagattcgatgattcaacttcgtcagttgaagtttcaacttcatca |
14328677 |
T |
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| Q |
205 |
acgtctttccgactattcaacaaatattaagcattgtggtgctgagttatgtaaattgttggacaatcc---aaggctctaagaattgatccaagagg |
299 |
Q |
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| T |
14328676 |
actttttttcaactattcaacaaatatt-aggattggggtgctgagttatgtaaattgttggacaatcccaagaggctctaagaattgatccaagagg |
14328580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 14328503 - 14328555
Alignment:
| Q |
324 |
ttgaagcaagactgcaaaatacgtcttttcgactattctttatatgctttatat |
377 |
Q |
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| T |
14328503 |
ttgaagcaagactgcaaaatacgtc-tttcgactattctttatatgctttatat |
14328555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 14328609 - 14328566
Alignment:
| Q |
292 |
ccaagaggctctaataattgatccaagaggtgttgaagcaagac |
335 |
Q |
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| T |
14328609 |
ccaagaggctctaagaattgatccaagaggtgtcgaagcaagac |
14328566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 44052751 - 44053040
Alignment:
| Q |
16 |
attggatgatttgtataaacagtttacaaattttaaattgagatttaactctttcacaccaaaggaatctcaattcactaatggtgagagacactggaca |
115 |
Q |
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| T |
44052751 |
attggaagatctgtataagcaatgtacagattttaaattgagatttatctccttcacatttaagggatctcaattcactaatgatgaga----ctggaca |
44052846 |
T |
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| Q |
116 |
aaaatttgacattgaagaataccaagaaatctgtgccggaattgatagactagagtcga--tttcagcttc-------gtcatttttcaactttatcaac |
206 |
Q |
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| T |
44052847 |
aaaatttgtcattgaagaataccaggaaatatgtgccggaattgatagactagagtcgaagattcaacttctcgtcaggtgaagtttcaactatatcaac |
44052946 |
T |
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| Q |
207 |
gtctttccgactattcaacaaatattaagcattgtggtgctgagttatgtaaattgttggacaat-ccaaggctctaagaattgatccaagagg |
299 |
Q |
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| T |
44052947 |
gtttttacacctattcggcaaatattaaggattgcgatgatgatttgtgtaaattgctggacaatcccaaggctgtaagaattgatccaagagg |
44053040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 44053016 - 44053059
Alignment:
| Q |
297 |
aggctctaataattgatccaagaggtgttgaagcaagactgcaa |
340 |
Q |
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| T |
44053016 |
aggctgtaagaattgatccaagaggtgtggaagcaagactgcaa |
44053059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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