View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_20 (Length: 381)
Name: NF19917_low_20
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 11137175 - 11137528
Alignment:
| Q |
18 |
atcaatttaattattagtgatgattaattaaattaacacatgtatgtatcgacaggcagatggtcctaattggaaggttcccttaggaagaagggatggt |
117 |
Q |
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| T |
11137175 |
atcattttaattattagtgatgattaattaaattaatacatgtatgtattgacaggcagatggtcctaattggaaggttcccttaggaagaagggatggt |
11137274 |
T |
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| Q |
118 |
ttaaccgccaaccaatcacttgcgaatcaaaatcttccggctccattcaattcgttggatcaacttaaatctgcatttgctgctcaaggcctcagtacta |
217 |
Q |
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| T |
11137275 |
ttaaccgccaaccaatcgctcgctaatcaaaatcttccggctccattcaattcgttggatcaacttaaatctgcatttgctgctcaaggcctcagtacta |
11137374 |
T |
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| Q |
218 |
ctgatctagttgctctctcaggtatgcgatgttttctaattaaaagtgcttgaatcacttcgttatcatgtatataataacaaattataaggctaatata |
317 |
Q |
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| T |
11137375 |
ctgatctagttgctctctcaggtatgcaatgttttctaattaaaagtgctcgaatcacttcgttatcatgtatataataacaaattataaggctaatata |
11137474 |
T |
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| Q |
318 |
tatgcttcaaatgtaggtgctcatacattcggaagagcacgttgcactttcatc |
371 |
Q |
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| T |
11137475 |
tatgcttcaaatgtaggtgctcatacattcggaagagcacgttgcactttcatc |
11137528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 243
Target Start/End: Original strand, 11145551 - 11145715
Alignment:
| Q |
79 |
ggtcctaattggaaggttcccttaggaagaagggatggtttaaccgccaaccaatcacttgcgaatcaaaatcttccggctccattcaattcgttggatc |
178 |
Q |
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| T |
11145551 |
ggtcctgattggaaagttcctttaggaagaagagatggtttaacagcaaaccaatcacttgctaatcaaaatcttccagctccttttaactcattagatc |
11145650 |
T |
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| Q |
179 |
aacttaaatctgcatttgctgctcaaggcctcagtactactgatctagttgctctctcaggtatg |
243 |
Q |
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| T |
11145651 |
aactcaaagctgcatttgcttctcaaggcctcagtactactgatctagttgcactctcgggtatg |
11145715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 11156173 - 11156340
Alignment:
| Q |
69 |
acaggcagatggtcctaattggaaggttcccttaggaagaagggatggtttaaccgccaaccaatcacttgcgaatcaaaatcttccggctccattcaat |
168 |
Q |
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| T |
11156173 |
acaggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccggacacttgcaaatcaaaatcttccggccccattcaat |
11156272 |
T |
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| Q |
169 |
tcgttggatcaacttaaatctgcatttgctgctcaaggcctcagtactactgatctagttgctctctc |
236 |
Q |
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| T |
11156273 |
accttggttcaacttaaagctgcatttactgcccaaggcctgaatactactgatctagttgcactctc |
11156340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 11149478 - 11149650
Alignment:
| Q |
71 |
aggcagatggtcctaattggaaggttcccttaggaagaagggatggtttaaccgccaaccaatcacttgcgaatcaaaatcttccggctccattcaattc |
170 |
Q |
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| T |
11149478 |
aggcagatggtcctgactggaaagttcctttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatcttccagctcctttcaatac |
11149577 |
T |
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| Q |
171 |
gttggatcaacttaaatctgcatttgctgctcaaggcctcagtactactgatctagttgctctctcaggtatg |
243 |
Q |
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| T |
11149578 |
tactgatcaacttaaagctgcatttgctgctcaaggtctcgatactactgatctggttgcactctcgggtatg |
11149650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 11118504 - 11118573
Alignment:
| Q |
175 |
gatcaacttaaatctgcatttgctgctcaaggcctcagtactactgatctagttgctctctcaggtatgc |
244 |
Q |
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| T |
11118504 |
gatcaacttaaatcttcctttgctgctcaaggactcaacacggttgatctagtagcactctcaggtatgc |
11118573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 11110466 - 11110534
Alignment:
| Q |
87 |
ttggaaggttcccttaggaagaagggatggtttaaccgccaaccaatcacttgcgaatcaaaatcttcc |
155 |
Q |
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| T |
11110466 |
ttgggaggttccactaggaagaagggatagtctaacagcaaatcaatcccttgccaatcaaaatcttcc |
11110534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 11178507 - 11178559
Alignment:
| Q |
70 |
caggcagatggtcctaattggaaggttcccttaggaagaagggatggtttaac |
122 |
Q |
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| T |
11178507 |
caggcaaatggtcctacttggcaagttccattaggaagaagggatagtttaac |
11178559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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