View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_21 (Length: 358)
Name: NF19917_low_21
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 32264745 - 32264413
Alignment:
| Q |
18 |
acaataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttaaaaacaagttgtagattcaaccaagtccc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32264745 |
acaataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttataaacaagttgtagattcaaccaagtccc |
32264646 |
T |
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| Q |
118 |
tctcccccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264645 |
tctcccccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaa |
32264546 |
T |
|
| Q |
218 |
aaccctgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgcagtgtcgcaacatctttg |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32264545 |
aacctcgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgtagtgtcgcaacatctttg |
32264446 |
T |
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| Q |
318 |
atattgtgtactcattatatatgtgtctgtgct |
350 |
Q |
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| T |
32264445 |
atattgtgtactcattatatatgcgtctgtgct |
32264413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 123 - 298
Target Start/End: Complemental strand, 32255577 - 32255402
Alignment:
| Q |
123 |
cccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaaccc |
222 |
Q |
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|||||| |||||||||||||||| |||||| |||||| ||||||||||||| |||||| |||| ||| ||||| | |||||||||| ||||||||||| |
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| T |
32255577 |
cccttattgttggtcttagtttaggggaaagtttgtgaagctcacggaacagaatttttatgtcaagtgtgaggcacccaactagtgcccatgaaaaccc |
32255478 |
T |
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| Q |
223 |
tgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccg |
298 |
Q |
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| T |
32255477 |
cgccctaatgaccgcatgtagcattgcaatgtgttgagcccctggtgacatttgataagccagaacaatccaaccg |
32255402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 32255691 - 32255624
Alignment:
| Q |
20 |
aataatcattggaatactttttctatcaaaataaaaaataatcatagaaaaagtattcaatacaggtta |
88 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
32255691 |
aataatcattggaatactttttcaatcaaaata-aaaataatcatagaaaaagaattcaatacaggtta |
32255624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 32249601 - 32249544
Alignment:
| Q |
275 |
tgataagccagaacaatccaaccgcagtgtcgcaacatctttgatattgtgtactcat |
332 |
Q |
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||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
32249601 |
tgataagccagaacaatccaatcatagcaccgcaacatctttgatattgtgtactcat |
32249544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 264
Target Start/End: Complemental strand, 23203314 - 23203167
Alignment:
| Q |
124 |
ccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgca-tgaaaaccc |
222 |
Q |
| |
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|||||||| |||||| ||||| |||||| |||||| ||||||||||||| ||||||||| |||| ||| ||||| |||||||||||| ||||||| | |
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| T |
23203314 |
ccttaatgctggtctatgtttaggggaaagtttgtgaagctcacggaacatgtttttaatgtcaagcgcgaagcgctaaactagtgcgcattgaaaactc |
23203215 |
T |
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| Q |
223 |
tgccc------tgatgactgcacggagcactataatgtgttgagcccc |
264 |
Q |
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|||| | ||||| |||||||||||| |||||||||||||||| |
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| T |
23203214 |
cgccctaatattaatgaccgcacggagcactgtaatgtgttgagcccc |
23203167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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