View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_22 (Length: 355)
Name: NF19917_low_22
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 154 - 339
Target Start/End: Original strand, 48201761 - 48201949
Alignment:
| Q |
154 |
accttcttcaaacaaactctaaactctactgatgtttttcatctccattattgtgattcttgtaattac----tactattagattagattccttaaatag |
249 |
Q |
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| T |
48201761 |
accttcttcaaacaaactctaaactctactgatgtttttcatctccattattgtgattcttgtaattacgtactactattagattagattccttaaatag |
48201860 |
T |
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| Q |
250 |
ttctctagaaaaacaaatatgaaatgtcactaccaaaataaatggccctttgaaatctatgatcatgtacactttatttctacacgtttc |
339 |
Q |
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| T |
48201861 |
ttctctagaaaa-caaatatgaaatgtcactaccaaaataaatggccctttgaaatctatgatcatgtacactttatttctacacgtttc |
48201949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 48201624 - 48201685
Alignment:
| Q |
16 |
atgttttctaggaaaccttataaaaattatctaacaaaatttaagaataaattctttttatt |
77 |
Q |
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| T |
48201624 |
atgttttctaggaaaccttataaaaattgtctaacaaaatttaagaataaattatttttatt |
48201685 |
T |
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