View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_26 (Length: 329)
Name: NF19917_low_26
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 34483660 - 34483933
Alignment:
| Q |
9 |
tagccgcttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttctgc |
108 |
Q |
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| T |
34483660 |
tagccacttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttctgc |
34483759 |
T |
|
| Q |
109 |
ttttgtgtatttatcctcaaagttttcgtatgtgaattctgttattcgtgccacactaagaataatttcaagcaccggccttgggatgttttctatcttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
34483760 |
ttttgtgtatttatcctcaaagttttcgtatgtgaactctgttattcgtgccacattaagaataatttcaagcaccgaccttggaatgttttctatcttg |
34483859 |
T |
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| Q |
209 |
aggcactcttcattcataatcatccaataatcttcaatctcaatttgaatgagtttataagcttcttctcttga |
282 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34483860 |
aggcactcttcattcataattatccaataatcttcaatctcaatttgaataagtttataagcttcttctcttga |
34483933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 34448294 - 34448596
Alignment:
| Q |
7 |
aatagccgcttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttct |
106 |
Q |
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||||||| |||||||||| |||| |||||||||||||| | | ||||||| ||||||||||| | |||||||||||||||||||||||| | ||||||| |
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| T |
34448294 |
aatagccacttattataactgatcttgcttcttctactcacttagctcgatgcttataggatccacaagtagtgcaacaatgtaatcttttagcagttct |
34448393 |
T |
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| Q |
107 |
gcttttgtgtatttatcctcaaagttttcgtatgtgaattctgttattcgtgccacactaagaataatttcaagcaccggccttgggatgttttctatct |
206 |
Q |
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| T |
34448394 |
ggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaact |
34448493 |
T |
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| Q |
207 |
tgaggcactcttcattcataatcatccaataatcttcaatctcaatttgaatgagtttataagcttcttctcttgatatatcatattgtttcatgcaaca |
306 |
Q |
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|||| |||||||||||||| | | ||||||||| || || || | |||||| |||||||| ||||||| ||| || |||||||| ||||||||||| |
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| T |
34448494 |
tgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaaca |
34448593 |
T |
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| Q |
307 |
ttc |
309 |
Q |
| |
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||| |
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| T |
34448594 |
ttc |
34448596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 34459527 - 34459826
Alignment:
| Q |
7 |
aatagccgcttattataattgattttgcttcttctacttgcattgctcgattcttataggatctataagtagtgcaacaatgtaatctttcatcagttct |
106 |
Q |
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||||||| |||||||||| |||| |||||||||||||| |||||||||||| ||||||||||||| ||| |||||| ||||||||||||| | ||| ||| |
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| T |
34459527 |
aatagccacttattataactgatcttgcttcttctactcgcattgctcgatgcttataggatctacaagcagtgcagcaatgtaatctttgagcagatct |
34459626 |
T |
|
| Q |
107 |
gcttttgtgtatttatcctcaaagttttcgtatgtgaattctgttattcgtgccacactaagaataatttcaagcaccggccttgggatgttttctatct |
206 |
Q |
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| |||||||||||||||||||||| ||||||| |||| | ||| ||| || | | |||||||| ||||||||| |||||||| |||| | || | |
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| T |
34459627 |
ggatttgtgtatttatcctcaaagtcttcgtatatgaagtgagttcctcgcgcaaaattaagaatacattcaagcactggccttggaatgtggtgtaatt |
34459726 |
T |
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| Q |
207 |
tgaggcactcttcattcataatcatccaataatcttcaatctcaatttgaatgagtttataagcttcttctcttgatatatcatattgtttcatgcaaca |
306 |
Q |
| |
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| ||||||||||||||||||| |||| ||||||||||||| | |||||||||||||||| |||||| |||||| |||||||| ||||||||||| |
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| T |
34459727 |
ttaggcactcttcattcataactctccataaatcttcaatctccttgagaatgagtttataagcctcttcttgtgatatgtcatattgcttcatgcaaca |
34459826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 246
Target Start/End: Original strand, 34473618 - 34473805
Alignment:
| Q |
59 |
cttataggatctataagtagtgcaacaatgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaattctgttattcgtg |
158 |
Q |
| |
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||||| |||||||| || |||||||||| || ||||||| |||||| | ||||||||||||||||| |||||||||| ||||| || |||||||||| |
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| T |
34473618 |
cttattggatctatgagaagtgcaacaacatagtctttcaacagttccccatttgtgtatttatcctcgtagttttcgtaggtgaactcggttattcgtg |
34473717 |
T |
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| Q |
159 |
ccacactaagaataatttcaagcaccggccttgggatgttttctatcttgaggcactcttcattcataatcatccaataatcttcaat |
246 |
Q |
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| T |
34473718 |
ccacattaagaatacattcaagcacagggttggggatgtagtctaacttgaggaactcttcatttatatccatccaaaaatcttcaat |
34473805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 82 - 310
Target Start/End: Complemental strand, 6132428 - 6132200
Alignment:
| Q |
82 |
aacaatgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaattctgttattcgtgccacactaagaataatttcaagc |
181 |
Q |
| |
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||||||||| ||||||| || ||| | ||||||||||||||||||||||||||||||||||| || | || ||| |||||| ||| |||| |||| | | |
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| T |
6132428 |
aacaatgtagtctttcagcaattccccatttgtgtatttatcctcaaagttttcgtatgtgaactcggctactcgcgccacattaacaatactttcgacc |
6132329 |
T |
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| Q |
182 |
accggccttgggatgttttctatcttgaggcactcttcattcataatcatccaataatcttcaatctcaatttgaatgagtttataagcttcttctcttg |
281 |
Q |
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|| || ||||||||| |||| ||||| |||||||||||||||| |||||||||||||| ||||| | |||||||||| |||||||| ||| || |
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| T |
6132328 |
actgggcttgggatgcagtctaatttgagacactcttcattcataactatccaataatcttcgatctctttcagaatgagtttgtaagcttcctcttgtg |
6132229 |
T |
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| Q |
282 |
atatatcatattgtttcatgcaacattca |
310 |
Q |
| |
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| ||||||||||| ||||||||||||||| |
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| T |
6132228 |
acatatcatattgcttcatgcaacattca |
6132200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 6135987 - 6135912
Alignment:
| Q |
174 |
tttcaagcaccggccttgggatgttttctatcttgaggcactcttcattcataatcatccaataatcttcaatctc |
249 |
Q |
| |
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|||||||||| || ||||| ||| |||| |||||||||||||||||||||||| ||||||| ||| |||||||| |
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| T |
6135987 |
tttcaagcactggtcttggtatgcaatctaacttgaggcactcttcattcataattatccaattatcgtcaatctc |
6135912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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