View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_28 (Length: 317)
Name: NF19917_low_28
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 299
Target Start/End: Complemental strand, 43561965 - 43561677
Alignment:
| Q |
11 |
cagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatc |
110 |
Q |
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| T |
43561965 |
cagagactgcaacagccacccggtttatcacggcgttcgaatgcgaagctggggaaaatgggtatcggaaatccgcgaacctcgcaaaaaatcacgaatc |
43561866 |
T |
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| Q |
111 |
tggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagcaattctgaacttccccgaaa |
210 |
Q |
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| T |
43561865 |
tggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagcaattcttaacttccccgaaa |
43561766 |
T |
|
| Q |
211 |
tagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggtggaatttgat |
299 |
Q |
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| T |
43561765 |
tagcgcacatgcttccaagaccaacaacgttgtctccacgtgacattcaagttgcagctgcagaagctgctgccatggtggaatttgat |
43561677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 36077810 - 36077744
Alignment:
| Q |
99 |
aaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctg |
165 |
Q |
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| T |
36077810 |
aaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 4268648 - 4268763
Alignment:
| Q |
54 |
cgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgc |
153 |
Q |
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| T |
4268648 |
cgaaactggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcac |
4268747 |
T |
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| Q |
154 |
atgatgttgctgcttt |
169 |
Q |
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| T |
4268748 |
acgatgtagcagcttt |
4268763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 505615 - 505520
Alignment:
| Q |
96 |
aaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatgttgctgctttgagtataaagggtcattcagca |
191 |
Q |
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| T |
505615 |
aaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagggtcattcagca |
505520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 16357926 - 16357796
Alignment:
| Q |
60 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
159 |
Q |
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||||||||||||||||| ||||| || || || | || || ||| |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||| |
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| T |
16357926 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
16357827 |
T |
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| Q |
160 |
ttgctgctttgagtataaagggtcattcagc |
190 |
Q |
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| T |
16357826 |
tagctgctttagccataaagggtcattcagc |
16357796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 33589193 - 33589286
Alignment:
| Q |
49 |
gaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggc |
142 |
Q |
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||||||||| ||||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||||| || ||||| |||||||||| |
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| T |
33589193 |
gaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacatatgctacggctgaaatggc |
33589286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 33602312 - 33602408
Alignment:
| Q |
49 |
gaatgcgaagctggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagc |
145 |
Q |
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||||||||| |||||||||||||| || |||||||| ||||| || || ||| ||||||||||| ||||| | ||| || ||||||||||||| |
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| T |
33602312 |
gaatgcgaacatggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggctaggaacattcgcaaccgctgaaatggcagc |
33602408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 71010 - 71116
Alignment:
| Q |
60 |
tggggaaaatgggtatcagaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
159 |
Q |
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|||||||| ||||| || ||||||||||| || || || ||||| || || ||||| || |||| | | ||| |||||||||| |||||||||||||| | |
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| T |
71010 |
tggggaaagtgggtgtccgaaatccgcgagccacgtaagaaatcgcggatttggctaggcactttccccactgctgaaatggctgctagagcgcatgacg |
71109 |
T |
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| Q |
160 |
ttgctgc |
166 |
Q |
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|||||| |
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| T |
71110 |
ctgctgc |
71116 |
T |
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