View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_29 (Length: 306)
Name: NF19917_low_29
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 44187088 - 44186808
Alignment:
| Q |
1 |
ctatatgtaaaacaaatccacggtcaaagcaaaacaacaagataaaaataataggtttgattttataaatttagtgaatgttaacacatcctctaactct |
100 |
Q |
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| T |
44187088 |
ctatatgtaaaacaaatccacggtcaaagcaaaacaacaagataaaaataataggtttgatttta---atttagtgaatgttaatacatcctct------ |
44186998 |
T |
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| Q |
101 |
ttacggtgcaaaagatgagcaaatcaatatagttaatacatgaatgataaactggtggtaggtttaattttaatttagtgatatgttgcaataaattttc |
200 |
Q |
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| T |
44186997 |
ttacggtgcaaaagatgagcaaatcaataaagttaatacatgaatgataaactggtggtaggtttaattttaatttagtgatatgttgcaataaattttc |
44186898 |
T |
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| Q |
201 |
aaagcttcttccccactaaagtgttgataatcttcgtcaatctcattttcatcatcatcatcaacttggcctgcatcttctccattgatt |
290 |
Q |
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| T |
44186897 |
aaagcttcttccccactaaagtgttgataatcttcgtcaatctcattttcatcatcatcatcaacttggcctccatcttctccattgatt |
44186808 |
T |
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Back To:
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 45872409 - 45872324
Alignment:
| Q |
197 |
tttcaaagcttcttccccactaaagtgttgataatcttcgtcaatctcattttcatcatcatcatcaacttggcctgcatcttctccat |
285 |
Q |
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| T |
45872409 |
tttccaagcttctttcttactaaagtgttggtaatcttcgtcaatcctattctcatcatc---atcaacttgacctgcatcttatccat |
45872324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 8015105 - 8015072
Alignment:
| Q |
252 |
tcatcatcatcaacttggcctgcatcttctccat |
285 |
Q |
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| T |
8015105 |
tcatcatcatcaacttggcctgcatcttctccat |
8015072 |
T |
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