View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_31 (Length: 302)
Name: NF19917_low_31
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 35075656 - 35075376
Alignment:
| Q |
1 |
aatttcaaacttttgattaagttgagagagatttttatcatccaaacataaattccaactcaaaatcttaataatattggactacctaacctaacatatt |
100 |
Q |
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| T |
35075656 |
aatttcaaacttttgattaaattgagagagatttttatcatccaaacataaatttcaactcaaaatcttaataatattgaactacctaacctaacatatt |
35075557 |
T |
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| Q |
101 |
gtttgttttggtaattcattactgatcttcccaacattataggtggagnnnnnnntattctaaacnnnnnnnattacaaaagggttaaaagtccaaattt |
200 |
Q |
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| T |
35075556 |
gtttgttttggtaattcattactgatcttcccaacattataggtggagaaaaaaatattctaaactttttttattacaaaagggttaaaagtccaaattt |
35075457 |
T |
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| Q |
201 |
gtatcatccaaccataaattccaaccgacagtcttaattatattggactattgctaacatgattatattggagtatagcta |
281 |
Q |
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| T |
35075456 |
gtatcatccaaccataaattgcaaccgacagtcttgattatattggactattgctaacatgattatattggagtatagcta |
35075376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 35075378 - 35075329
Alignment:
| Q |
91 |
ctaacatattgtttgttttggtaattcattactgatcttcccaacattat |
140 |
Q |
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| T |
35075378 |
ctaacacattgcttgttttggtaattcaatactgattttcacaacattat |
35075329 |
T |
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