View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_40 (Length: 272)
Name: NF19917_low_40
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 18504035 - 18504280
Alignment:
| Q |
12 |
atgaagtgtttttgttatgttctataaatacatnnnnnnnccaagaacatgtggaatctatattatgagaataaatagtagccaatggaaacattaaaat |
111 |
Q |
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| T |
18504035 |
atgaagtgtttttgttatgttctataaagacataaaaaa-ccaagaacatatggaatctatattatgagaataaatagtagccaatggaaacattaaaat |
18504133 |
T |
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| Q |
112 |
atattagaagtgttcattttagtttcaatttctaaatgccaccctaagcaatgaatatttcatcaaagggttaggtaaatgcatcatgcttcatgcat-- |
209 |
Q |
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| T |
18504134 |
atactagaagtgttcattttagtttcaatttctaaatgccacccaaagcaatgaatatttcatcaaagggttaggtaaatgcatcatgcttcatgcatat |
18504233 |
T |
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| Q |
210 |
-ataatcaattgcagccttgattcatacacacaattaaacatgtaaa |
255 |
Q |
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| T |
18504234 |
aataatcaattgcagccttgattcatacacacaattaaacatgtaaa |
18504280 |
T |
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