View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_44 (Length: 265)
Name: NF19917_low_44
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_44 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 38655077 - 38655341
Alignment:
| Q |
1 |
aatccttgatttccaagacattctccaacgtttcacgtttgacaacatctgcaaaatcgcgtttggtttcgatccagaatacttaactctgtcgtctaaa |
100 |
Q |
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| T |
38655077 |
aatccttgatttccaagacattctccaacgtttcacgtttgacaatatctgcaaaatcgcgtttggtttcgatccagaatacttaactccgtcggctaaa |
38655176 |
T |
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| Q |
101 |
agaacgaaattcgcacaagcttttgaagatgcaacagaaatcagcagcagacgtttccgtttaccgttaccagttatatggaaaatgaagaaacgtttca |
200 |
Q |
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| T |
38655177 |
agaacgaaattcgcacaagcttttgaagatgcaacagaaatcagcagcagacgtttccgtttaccgttaccagttatatggaaaatgaagaaacgtttca |
38655276 |
T |
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| Q |
201 |
acataggttcagaaaagcgtctacgtgaagcagtaacagaaataagagaattcgcgaacaaaata |
265 |
Q |
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| T |
38655277 |
acataggttcagaaaagcgtctacgtgaagcagtaacagaaataagagaatacgcgaacaaaata |
38655341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 38642169 - 38642433
Alignment:
| Q |
1 |
aatccttgatttccaagacattctccaacgtttcacgtttgacaacatctgcaaaatcgcgtttggtttcgatccagaatacttaactctgtcgtctaaa |
100 |
Q |
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| T |
38642169 |
aatccttgatttccaagacattcttcaacgtttcacgttcgacaacatctgcaaaatctcatttggtttcgatccagagtacctaacaccatcaactaac |
38642268 |
T |
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| Q |
101 |
agaacgaaattcgcacaagcttttgaagatgcaacagaaatcagcagcagacgtttccgtttaccgttaccagttatatggaaaatgaagaaacgtttca |
200 |
Q |
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| T |
38642269 |
aaaacaagctttgcaaaagcattcgaagatgcaacagaaataagcggtaaacgttttcgtttaccattaccagttatatggaaaatgaaaaaatgtttca |
38642368 |
T |
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| Q |
201 |
acataggttcagaaaagcgtctacgtgaagcagtaacagaaataagagaattcgcgaacaaaata |
265 |
Q |
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| T |
38642369 |
acataggttcagaaaaacgtttacatgaagcaataacacaagtacgcgaattcgcaaaaaaaata |
38642433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 31077637 - 31077717
Alignment:
| Q |
5 |
cttgatttccaagacattctccaacgtttcacgtttgacaacatctgcaaaatcgcgtttggtttcgatccagaatactta |
85 |
Q |
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| T |
31077637 |
cttgattttcaagatatcctccaacgttttacgttcgatagtatctgcagaatcgcgtttggattcgatccggagtactta |
31077717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 31126959 - 31127025
Alignment:
| Q |
9 |
atttccaagacattctccaacgtttcacgtttgacaacatctgcaaaatcgcgtttggtttcgatcc |
75 |
Q |
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| T |
31126959 |
attttcaagatattctccaacgtttcacgtttgataatatttgcataattgcgtttggatttgatcc |
31127025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 31131665 - 31131739
Alignment:
| Q |
7 |
tgatttccaagacattctccaacgtttcacgtttgacaacatctgcaaaatcgcgtttggtttcgatccagaata |
81 |
Q |
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| T |
31131665 |
tgattttcaagatattctccaacgttttacgtttgataatatttgcataatcacatttggattcgatccggaata |
31131739 |
T |
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