View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_45 (Length: 265)
Name: NF19917_low_45
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_45 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 34208271 - 34208018
Alignment:
| Q |
14 |
ccacactcaaaaacagagcaatgactaagctcaacatcaccaccattttctccttcttagcccttctcctcacttcaaccgaagccagactccccggtgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34208271 |
ccacactcaaaaacagagcaatgactaagctcaacatcaccaccattttctccttcttagcccttctcctcacttcaaccgaagccagactccccggtgt |
34208172 |
T |
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| Q |
114 |
ctactccggcggagcatggcaaaccgctcacgccaccttctacggcggcagcgacgcctctggaacaatgggttagtactag--nnnnnnnncaaccacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
34208171 |
ctactccggcggagcatggcaaaccgctcacgccaccttctacggcggcagcgacgcctccggaacaatgggttagtactagaaaaaaaaaacaaccacc |
34208072 |
T |
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| Q |
212 |
aaccataccacaattttatttattttttgttctaaaatagctagcaaattcaaa |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34208071 |
aaccataccacaattttatttattttttgttctaaaatacctagcaaattcaaa |
34208018 |
T |
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