View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19917_low_47 (Length: 252)

Name: NF19917_low_47
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19917_low_47
NF19917_low_47
[»] chr6 (2 HSPs)
chr6 (19-242)||(4435364-4435587)
chr6 (40-80)||(4091741-4091784)
[»] chr3 (1 HSPs)
chr3 (19-242)||(46595251-46595474)
[»] chr5 (2 HSPs)
chr5 (19-242)||(37719493-37719715)
chr5 (36-238)||(30440715-30440914)
[»] chr1 (2 HSPs)
chr1 (19-238)||(25868562-25868781)
chr1 (23-238)||(16961128-16961346)
[»] chr8 (2 HSPs)
chr8 (149-238)||(38016561-38016650)
chr8 (149-201)||(27277282-27277334)
[»] scaffold0007 (1 HSPs)
scaffold0007 (167-220)||(81770-81823)
[»] chr4 (1 HSPs)
chr4 (149-201)||(43045835-43045887)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 4435364 - 4435587
Alignment:
Q  19 ctctccagtcgatgctgctcttctcctctcccaatcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagac 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435364 ctctccagtcgatgctgctcttctcctctcccagtcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagac 4435463  T
Q  119 cgtgagttgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaaca 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4435464 cgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaataca 4435563  T
Q  219 ttgattttgctgacctaatttcat 242  Q
    ||||||||||||||||||||||||    
T  4435564 ttgattttgctgacctaatttcat 4435587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 4091741 - 4091784
Alignment:
Q  40 tctcctctcccaatcgatgctctgctctt---catcctcatcga 80  Q
    |||||||||||||||||||||||||||||   ||||||||||||    
T  4091741 tctcctctcccaatcgatgctctgctcttcttcatcctcatcga 4091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 46595474 - 46595251
Alignment:
Q  19 ctctccagtcgatgctgctcttctcctctcccaatcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagac 118  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595474 ctcttcagtcgatgctgctcttctcctctcccagtcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagac 46595375  T
Q  119 cgtgagttgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaaca 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46595374 cgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaataca 46595275  T
Q  219 ttgattttgctgacctaatttcat 242  Q
    ||||||||||||||||||||||||    
T  46595274 ttgattttgctgacctaatttcat 46595251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 37719715 - 37719493
Alignment:
Q  19 ctctccagtcgatgctgctcttctcctctcccaatcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagac 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  37719715 ctctccagtcgatgctgctcttctcctctcccagtcgatgctctgctcttcatcctcatcgactcaagctccggccatcttccataaaccaccacgagac 37719616  T
Q  119 cgtgagttgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaaca 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37719615 cgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaa-ccatgaaaaaaca 37719517  T
Q  219 ttgattttgctgacctaatttcat 242  Q
    ||||||||||||||||||||||||    
T  37719516 ttgattttgctgacctaatttcat 37719493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 30440914 - 30440715
Alignment:
Q  36 ctcttctcctctcccaatcgatgctctgctcttc---atcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagt 132  Q
    ||||||||||||| || |||||||||||||||||   ||| |||| | ||| |||||| |||||||| ||||||||||||| |||| ||||||||||| |    
T  30440914 ctcttctcctctctcagtcgatgctctgctcttcttcatcgtcattgcctctagctccagccaccttacgtaaaccaccacaagactgtgagttgagaat 30440815  T
Q  133 gaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgac 232  Q
    ||||||||||||      ||| ||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||  ||||||||||||||||    
T  30440814 gaacatattcat------ctcacatcaaatccagatctcaaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgac 30440721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 25868562 - 25868781
Alignment:
Q  19 ctctccagtcgatgctgctcttctcctctcccaatcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagac 118  Q
    |||||||||||||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25868562 ctctccagtcgatgatgctcttctcctctcccagtaaatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagac 25868661  T
Q  119 cgtgagttgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaaca 218  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  25868662 cgtgagtcgagagagaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaaca 25868761  T
Q  219 ttgattttgctgacctaatt 238  Q
    ||||||||||||||||||||    
T  25868762 ttgattttgctgacctaatt 25868781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 16961346 - 16961128
Alignment:
Q  23 ccagtcgatgctgctcttctcctctcccaatcgatgctctgctctt---catcctcatcgactcaagctccggccaccttccgtaaaccaccacgagacc 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16961346 ccagtcgatgctgctcttctcctctcccagtcgatgctctgctctttttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagacc 16961247  T
Q  120 gtgagttgagagtgaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacat 219  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  16961246 atgagtcgagagtgaacatattcatattcatctcgcatcaaatccagatctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacat 16961147  T
Q  220 tgattttgctgacctaatt 238  Q
    |||||||||||||||||||    
T  16961146 tgattttgctgacctaatt 16961128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 38016650 - 38016561
Alignment:
Q  149 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt 238  Q
    ||||| |||||||| |||||||  ||||| ||||||||| ||||||||||||| ||||||| |||| |||||||||||||| ||||||||    
T  38016650 atctcacatcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaatt 38016561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 27277334 - 27277282
Alignment:
Q  149 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttt 201  Q
    ||||| |||||||||  ||| ||||| || |||||||||||||||||||||||    
T  27277334 atctcacatcaaatctggatatcgaattcatctgcatctcgatctgttggttt 27277282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 81823 - 81770
Alignment:
Q  167 atctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacatt 220  Q
    |||| |||||| ||| ||||||||||||||||||| |||||||||||| |||||    
T  81823 atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 81770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 43045887 - 43045835
Alignment:
Q  149 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttt 201  Q
    |||||||||||||||  ||| |||| ||| |||||||||||||||||||||||    
T  43045887 atctcgcatcaaatctggatatcgatatcatctgcatctcgatctgttggttt 43045835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University