View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_48 (Length: 250)
Name: NF19917_low_48
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 49131759 - 49131514
Alignment:
| Q |
1 |
taaaaatgcaccatattataattttaagaaaattcaaaagaaacttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctgagcaga |
100 |
Q |
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| T |
49131759 |
taaaaatgcaccatattataattttaagaaaattcaaaagaaacttacacaagttccaaatgaaaaagaaccgcaaacagcaacaaatgtgctgagcaga |
49131660 |
T |
|
| Q |
101 |
accattccaatggatccattttcagcccttttattagattcaatatcatgatagtcaacagtagcatcctttccatgttgaatgaagggctcttgtaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49131659 |
accattccaatggatccattttcagcccttttattagattcaatatcatgatagtcaacagtagcatcctttccatgttgaatgaagggctcttgtaaat |
49131560 |
T |
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| Q |
201 |
ctctatgtgtattttcatgtccattctcaacatctctgtgctgctc |
246 |
Q |
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| T |
49131559 |
ctctatgtgtattttcatgtccactctcaacatccttgtgctgctc |
49131514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 6922589 - 6922509
Alignment:
| Q |
43 |
acttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctgagcagaaccattccaatggatccattttc |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6922589 |
acttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctaagcagaaccattccaatggatccattttc |
6922509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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