View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_5 (Length: 589)
Name: NF19917_low_5
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 16 - 581
Target Start/End: Original strand, 39477003 - 39477574
Alignment:
| Q |
16 |
ataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgttcctactagtgataacatttcattgtgtc---actcttgtaatatg |
112 |
Q |
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| T |
39477003 |
ataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgttcctactagtgataacatttcattgtgtcgtcactcttgtaatatg |
39477102 |
T |
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| Q |
113 |
taaggccttaaa---tgcccgattgaatttcatataagggtaattttaaagtgaaccaactttgatctgtcactcaaaaacacatttaagtatattataa |
209 |
Q |
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| T |
39477103 |
taaggccttaaaccatgcccgattgaatttcatataagggtaattttaaagtgaaccaactttgatctgtcactcaaaaacacatttaagtatattataa |
39477202 |
T |
|
| Q |
210 |
aaattgaaactatcatttttatagttatgatgagtatattgtgaatgtcgtcggttcaatagtaaaagtttgaccttgtatttatgtaggaggcaagttt |
309 |
Q |
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| T |
39477203 |
aaattgaaactatcatttttatagttatgatgagtatattgtgaatgtcgtctgttcaatagtaaaagtttgaccttgtatttatgtaggaggcaagttt |
39477302 |
T |
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| Q |
310 |
gtagttctgttttggattgctgtttgatttctggtttgagaatttttctgtattgtgttcctttggcttttctgttttatctgatactacacctttttag |
409 |
Q |
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| T |
39477303 |
gtagttctgttttggattgctgtttgatttctggtttgagaatttttctgtattgtattcctttggcttttttgttttatctgatactacacctttttag |
39477402 |
T |
|
| Q |
410 |
taggattgattgagcatgttctgtactcaagttctgttggtctttatgaggttttttgaatcattaagaaaagcagtactgacaaaattgattctgcttc |
509 |
Q |
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| T |
39477403 |
taggattgattgagcatgttctgtactcaagttctgttggtctttatgaggttttttgaatcattaagaaaagcagtactgacaaaattgattctgcttc |
39477502 |
T |
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| Q |
510 |
atttttgttgctgttacattttcattcttaaccaaattgattatacatacaaaaattaaaaataagaataat |
581 |
Q |
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| T |
39477503 |
atttttgttgctgttacattttcattcttaaccaaattgattatacatacaaaaattaaaaataagaataat |
39477574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 39484717 - 39485033
Alignment:
| Q |
16 |
ataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgttcctactagtgataacatttcattgtgtcactcttgtaatatgtaa |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |||| | | | || |||||| ||||| |
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| T |
39484717 |
ataataaggattagccaatttcacttggctgaaagtct-gttcatttcagctgttcctactagtgataacgttccatttttttaatcctgtaatttgtaa |
39484815 |
T |
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| Q |
116 |
ggccttaa---atgcccgattgaatttcatataagggtaattttaaagtgaaccaactttgatctgtcactcaaaaacacatttaagtatattataaaaa |
212 |
Q |
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| T |
39484816 |
tgccttaagccatgcccgattgaatttcatataagggtaattttaaagtgaaccaacttt-atctgtcactcaacaacacatttaagtatattataaaaa |
39484914 |
T |
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| Q |
213 |
ttgaaactatcatttttatagttatgatgagtatattgtgaatgtcgtcggttcaatagtaaaagtttgaccttgtatttatgtaggaggcaagtttgta |
312 |
Q |
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| T |
39484915 |
ctgaaactatcatttttgtagttatgtttagtatattgttaat---gtcgattcaatagtaagaatttgacctggtatttatgtaggagacaagtttgta |
39485011 |
T |
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| Q |
313 |
gttctgttttggattgctgttt |
334 |
Q |
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| T |
39485012 |
gttctgtttcggtttgctgttt |
39485033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 422 - 571
Target Start/End: Original strand, 39485057 - 39485206
Alignment:
| Q |
422 |
agcatgttctgtactcaagttctgttggtctttatgaggttttttgaatcattaagaaaagcagtactgacaaaattgattctgcttcatttttgttgct |
521 |
Q |
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| T |
39485057 |
agcatgttctgtactcaagttctgctggtctttatgaagttttttggatcattaagaaaagcagtactgacaaaattgattctgcttcttttttggtgct |
39485156 |
T |
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| Q |
522 |
gttacattttcattcttaaccaaattgattatacatacaaaaattaaaaa |
571 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
39485157 |
gttacattttcattcttaaccaaattgagtatacacacaaaaattaaaaa |
39485206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 570
Target Start/End: Complemental strand, 39456709 - 39456659
Alignment:
| Q |
520 |
ctgttacattttcattcttaaccaaattgattatacatacaaaaattaaaa |
570 |
Q |
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| T |
39456709 |
ctgttacaattttattcttaaccaaattgagtttacatacaaaaatcaaaa |
39456659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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