View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_50 (Length: 250)
Name: NF19917_low_50
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 17250662 - 17250882
Alignment:
| Q |
18 |
agataatgtgttgactaaattgcatgtataacaatgatcttcttttttatcataggattatgatgagaaaagactgtttttaaggtgcgagtttttagac |
117 |
Q |
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| T |
17250662 |
agataatgtgtttactaaattgcatgtataacaatgatctccttttttatcataggattatgatgagaaaagattgtttttaaggtgcgagtttttagac |
17250761 |
T |
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| Q |
118 |
tactgcaaaagtgatagagacaaagtcaccaatgtcaccgaaacttaaagtcatcataatggaaacccccaactggcaatgtgctcacctcattagttgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17250762 |
tactgcaaaagtgatagagacaaagtcaccaatgttgccgaaacttaaagtcatcataatggaaacccccaactggcaatgtgctcacctcattagttgt |
17250861 |
T |
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| Q |
218 |
tggtttgtttgattcgtcctt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
17250862 |
tggtttgtttgattcgtcctt |
17250882 |
T |
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