View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_52 (Length: 249)
Name: NF19917_low_52
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_52 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2602477 - 2602707
Alignment:
| Q |
18 |
atactgacaggttttcttttttgacaatatatgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatg |
117 |
Q |
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| T |
2602477 |
atactgacaggttttcttttttgacaatatatgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatg |
2602576 |
T |
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| Q |
118 |
aattattgaaactaaaataagcaattttgtgagcaacatatgcacaagcacacataaccctacaatttctttgtcgacaaggttccgattgcagcaacta |
217 |
Q |
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| T |
2602577 |
aattattgaaactaaaataagcaattttgtgagtaacatatgcacaagcacacat-accctacaatttctttgtcgacaaggttccgattgcagcaacta |
2602675 |
T |
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| Q |
218 |
tatggcaaggtgagcatcatttagagggtgac |
249 |
Q |
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| T |
2602676 |
tatggcaaggtgagcatcatttagagggtgac |
2602707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 249
Target Start/End: Original strand, 2581063 - 2581262
Alignment:
| Q |
49 |
tgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatgaattattgaaactaaaataagcaattttgtg |
148 |
Q |
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| T |
2581063 |
tgacaatttatgattggaatattttgcaagttgtttccaatttcagaccattgctaggtttttaacatgaattgttgaaatcaaagtaagcaattttgtg |
2581162 |
T |
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| Q |
149 |
agcaacatatgc-acaagcacacataaccctacaatttctttgtcgacaaggttccgattgcagcaactatatggcaaggtgagcatcatttagagggtg |
247 |
Q |
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| T |
2581163 |
agtgagccatgcaaaaagcacacat--gcgtacaaattttgtgtcggcaaggttccgattgcagcgactatatggcaaggtcagcatcctttggagggtg |
2581260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 249
Target Start/End: Original strand, 2595811 - 2596010
Alignment:
| Q |
49 |
tgacaagttgtgattgagatattttgcaagttgtttccaattccagcacattactaggttgttaacatgaattattgaaactaaaataagcaattttgtg |
148 |
Q |
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|||||| || |||||| |||||||||||||||||||||||| ||| |||| ||||||| |||||||||||| |||||| ||| |||||||||||||| |
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| T |
2595811 |
tgacaatttatgattggaatattttgcaagttgtttccaatttcagaccattgctaggtttttaacatgaattgttgaaatcaaagtaagcaattttgtg |
2595910 |
T |
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| Q |
149 |
agcaacatatgc-acaagcacacataaccctacaatttctttgtcgacaaggttccgattgcagcaactatatggcaaggtgagcatcatttagagggtg |
247 |
Q |
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| T |
2595911 |
agtgagccatgcaaaaagcacacat--gcgtacaaattttgtgtcggcaaggttccgattgcagcgactatatggcaaggtcagcatcctttggagggtg |
2596008 |
T |
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