View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19917_low_69 (Length: 212)
Name: NF19917_low_69
Description: NF19917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19917_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 14988587 - 14988527
Alignment:
| Q |
135 |
agcgtcaacaaatcaaaattaatcatatgtatgactttaaaattaattatcatgaaaatca |
195 |
Q |
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| T |
14988587 |
agcgtcaacaaatcaaaattaatcatatgtgcgactttaaaattaattatcatgaaaatca |
14988527 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 14988645 - 14988591
Alignment:
| Q |
16 |
aaaatatcaagcaacggatgaaccaaccgattctatcatcaaagcaacataccag |
70 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14988645 |
aaaatatcaagcaacggatgaaccaaccaattctatcatcaaagcaacataccag |
14988591 |
T |
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