View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19918_high_11 (Length: 288)
Name: NF19918_high_11
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19918_high_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 13160243 - 13160509
Alignment:
| Q |
22 |
cggcaaacgaggttataaatctctacaaagcaaacaacattaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcagg |
121 |
Q |
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| T |
13160243 |
cggcaaacgaggttataaatctctacaaagcaaacaacattaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcagg |
13160342 |
T |
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| Q |
122 |
cattgaactcattcttggtgtgccaaattccgaccttcaaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttc |
221 |
Q |
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| T |
13160343 |
cattgaactcattcttggtgtgccaaattccgaccttcaaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttc |
13160442 |
T |
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| Q |
222 |
tggcctagtgtcaaaattaagtatattgcagttggtaatgaagtgagtccagttggaggctcttctt |
288 |
Q |
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| T |
13160443 |
tggcctagtgtcaaaatcaagtatattgcagttggtaatgaagtgagtccagttggaggctcttctt |
13160509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 13152970 - 13152730
Alignment:
| Q |
47 |
caaagcaaacaacattaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgcca |
146 |
Q |
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| T |
13152970 |
caaatcaaacaacatcaaaagaatgaggctatatgatccaaaccaagctgctcttgaagcacttagaaattctggcattgagcttatgttaggtgtgcca |
13152871 |
T |
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| Q |
147 |
aattccgaccttcaaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaattaagtata |
246 |
Q |
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| T |
13152870 |
aattctgatcttcaaaacattgctaccaacaatgacattgcaattcaatgggtacaaaaaaatgtactaaacttctaccctagtgtcaaaatcaaataca |
13152771 |
T |
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| Q |
247 |
ttgcagttggtaatgaagtgagtccagttggaggctcttct |
287 |
Q |
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| T |
13152770 |
tcgcggttggtaatgaagttaacccagttggtggctcttct |
13152730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 13146062 - 13145966
Alignment:
| Q |
191 |
tcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaattaagtatattgcagttggtaatgaagtgagtccagttggaggctcttct |
287 |
Q |
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| T |
13146062 |
tcaatgggtacaaaaaaatgtactaaacttctaccctagtgttaaaatcaaatacatcgcggtcggtaatgaagttaatccagttggcggctcttct |
13145966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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