View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19918_high_12 (Length: 278)

Name: NF19918_high_12
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19918_high_12
NF19918_high_12
[»] chr2 (1 HSPs)
chr2 (153-260)||(16149397-16149504)
[»] chr1 (2 HSPs)
chr1 (153-260)||(23302557-23302664)
chr1 (93-151)||(23304311-23304369)
[»] chr6 (1 HSPs)
chr6 (155-259)||(4652006-4652110)
[»] chr5 (3 HSPs)
chr5 (1-64)||(6768742-6768805)
chr5 (101-144)||(19081902-19081945)
chr5 (93-146)||(19083909-19083962)
[»] chr4 (2 HSPs)
chr4 (93-146)||(36757044-36757097)
chr4 (101-146)||(36759066-36759111)
[»] chr3 (4 HSPs)
chr3 (93-146)||(40108184-40108237)
chr3 (93-151)||(1094567-1094625)
chr3 (93-151)||(1094680-1094738)
chr3 (93-146)||(40110210-40110263)
[»] chr7 (1 HSPs)
chr7 (104-151)||(17003328-17003375)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 16149397 - 16149504
Alignment:
Q  153 taaatttagcagtaatgtgccttatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 252  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16149397 taaatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 16149496  T
Q  253 tgtctttg 260  Q
    ||||||||    
T  16149497 tgtctttg 16149504  T

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Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 23302664 - 23302557
Alignment:
Q  153 taaatttagcagtaatgtgccttatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 252  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23302664 taaatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgat 23302565  T
Q  253 tgtctttg 260  Q
    ||||||||    
T  23302564 tgtctttg 23302557  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 23304369 - 23304311
Alignment:
Q  93 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatgatccca 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||    
T  23304369 ataaggggtatttaatgctccacttttataggtttctacacatcctaataatgacccca 23304311  T

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Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 155 - 259
Target Start/End: Original strand, 4652006 - 4652110
Alignment:
Q  155 aatttagcagtaatgtgccttatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattg 254  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4652006 aatttagcagtaatgtgccatatacaaaaagcatgttttgtggatggcatttcaaaagcaatagcttgagtcatccatggatcttgatcagtaatgattg 4652105  T
Q  255 tcttt 259  Q
     ||||    
T  4652106 gcttt 4652110  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6768742 - 6768805
Alignment:
Q  1 taagaatttagcaatatcactttgtagataaggatctacaacacaatcaataccactttttata 64  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6768742 taagaatttagcaataccactttgtagataaggatctacaacacaatcaataccactttttata 6768805  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 19081902 - 19081945
Alignment:
Q  101 tatttaatgctccatttttataggtttctacacatcctattaat 144  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  19081902 tatttaatgctccacttttataggtttctacacatcctattaat 19081945  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 19083962 - 19083909
Alignment:
Q  93 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 146  Q
    ||||| |||||||||||||| | ||||||||| |||| |||||| |||||||||    
T  19083962 ataaggggtatttaatgctctacttttatagggttctccacatcttattaatga 19083909  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 36757044 - 36757097
Alignment:
Q  93 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 146  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  36757044 ataaggggtatttaatgctccacttttataggtttttacacatcctattaatga 36757097  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 36759111 - 36759066
Alignment:
Q  101 tatttaatgctccatttttataggtttctacacatcctattaatga 146  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||    
T  36759111 tatttaatgctccatttttatagggttctccacatcttattaatga 36759066  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 40108184 - 40108237
Alignment:
Q  93 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 146  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  40108184 ataaggggtatttaatgctccacttttataggtttttacacatcctattaatga 40108237  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 1094567 - 1094625
Alignment:
Q  93 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatgatccca 151  Q
    ||||| |||||||||||||||| |||||||||||||||| |||| ||||||||| ||||    
T  1094567 ataagtggtatttaatgctccacttttataggtttctacgcatcttattaatgacccca 1094625  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 1094738 - 1094680
Alignment:
Q  93 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatgatccca 151  Q
    ||||| ||||||||||| |||| ||||||||| |||| |||||| ||||||||| ||||    
T  1094738 ataagtggtatttaatgttccacttttatagggttctccacatcttattaatgacccca 1094680  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 40110263 - 40110210
Alignment:
Q  93 ataagaggtatttaatgctccatttttataggtttctacacatcctattaatga 146  Q
    ||||| |||||||||||||||| |||||| || |||| |||||| |||||||||    
T  40110263 ataaggggtatttaatgctccacttttattgggttctccacatcttattaatga 40110210  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 17003328 - 17003375
Alignment:
Q  104 ttaatgctccatttttataggtttctacacatcctattaatgatccca 151  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||| ||||    
T  17003328 ttaatgccccacttttataggtttctacacatcttattaatgacccca 17003375  T

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