View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19918_high_14 (Length: 250)
Name: NF19918_high_14
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19918_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13160543 - 13160784
Alignment:
| Q |
1 |
atatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaa |
100 |
Q |
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| T |
13160543 |
atatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaa |
13160642 |
T |
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| Q |
101 |
aggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttatttt |
200 |
Q |
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| T |
13160643 |
aggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttatttt |
13160742 |
T |
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| Q |
201 |
agccatgttggtaacccgcgcgatatatctcttccctatgct |
242 |
Q |
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| T |
13160743 |
agccatgttggtaacccgcgcgatatatctcttccttatgct |
13160784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 13152693 - 13152493
Alignment:
| Q |
3 |
atatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaag |
102 |
Q |
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| T |
13152693 |
atatatcaagcaataagagcgaaaaatctgcacgatcaaatcaaggtttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaag |
13152594 |
T |
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| Q |
103 |
gttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttag |
202 |
Q |
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| T |
13152593 |
gttcatttagaagcgatgtgaggtcatatttggatccaattataggctacttagtatatgcaaatgcacctttatttgcaaatatttactcttattttag |
13152494 |
T |
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| Q |
203 |
c |
203 |
Q |
| |
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| T |
13152493 |
c |
13152493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 13145901 - 13145729
Alignment:
| Q |
31 |
ttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcata |
130 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||| | || |||| ||| | ||| || ||||||||||| ||||||| ||||| |||||||| |
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| T |
13145901 |
ttcaagatcaaatcaaggtttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgaggtcata |
13145802 |
T |
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| Q |
131 |
cctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttagc |
203 |
Q |
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| T |
13145801 |
tttggatccaattataggctacttagtatatgcaaatgcacctttatttgcaaatatttactcttattttagc |
13145729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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