View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19918_high_4 (Length: 437)
Name: NF19918_high_4
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19918_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 10057461 - 10057035
Alignment:
| Q |
11 |
cagagattaaaaatctttacattagagtatcaagaaaccaatttttatgta---------------attaaaaatggcctaagtagggtacc--ctcaat |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
10057461 |
cagagattaaaaatctttacattagagtatcaagaaaccaatttttatgtattattattggattggattaaaaatggcctaagtagggtacctcctcaat |
10057362 |
T |
|
| Q |
94 |
caaaacccataacgtgagaggttggatacaattcacttttcccaaatctaatgttgttcctatctcttaatatgaaccacttgaatttttgatgacgtta |
193 |
Q |
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| T |
10057361 |
caaaacccataacgtgagaggttggatacaattcacttttcccaaatctaatgttgtccctatctcttaatatgaaccacttgaatttttgatgacgtta |
10057262 |
T |
|
| Q |
194 |
actgataaggtattttgtccctactgtttgtttggatcctgtcatcctcaaattacaatcccaattcacgacaacaataccatcaaaaagttactcacac |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10057261 |
actgataaggtattttgtccctactgtttgtttggatcctgtcatcctcaaattacaatcccaattcacgacaacaataccatcaaaaagttactcacac |
10057162 |
T |
|
| Q |
294 |
acctatgtcattttccacaatt--ttttcattgcaacaagacaattttccagatttgttacagttacacattttagcttttcacttttcagccaactata |
391 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10057161 |
acctatgtcattttccacaattttttttcattgcaacaagacaattttccagatttgttacagttacacattttagcttttcacttttcagccaactata |
10057062 |
T |
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| Q |
392 |
tttaacagaatgtcacgagcttctgtc |
418 |
Q |
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||||||||||||||||||||||||||| |
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| T |
10057061 |
tttaacagaatgtcacgagcttctgtc |
10057035 |
T |
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