View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19918_low_1 (Length: 641)
Name: NF19918_low_1
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19918_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 923558 - 924163
Alignment:
| Q |
18 |
tcaatagtcttttaaaatccaccaaataagcaaaagctaaaaagcatatacaacttaaataatagatgtcatagagatggagaacacatcatctatctta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
923558 |
tcaatagtcttttaaaatccaccaaataagcaaaagctaaaaagcatatacaacttaaataatagatgtcatagagatggagaacacatcatctatctta |
923657 |
T |
|
| Q |
118 |
atgtgtatgattttgtcatagggtgaaaattctcctatattttccaaacaattgaatcatagttggggatcggtaaagagaacactggagatgatcatat |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
923658 |
atgtgtgtgattttgtcatagggtgaaaattctcctatattttccaaacaattgaatcatagttggggatcagtaaagagaacactggagatgatcatat |
923757 |
T |
|
| Q |
218 |
ctctattttttcctttcatgagcaaatatttcctaagaactccctctttttggaaaccagctttctccaaaactctttgagacccagcattttccacatc |
317 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
923758 |
ctctactttttcctttcatgaccaaatatttcctaagaactccctctttttggaaaccagctttctccaaaactctttgagacccagcattttccacatc |
923857 |
T |
|
| Q |
318 |
aacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttaccccaa |
417 |
Q |
| |
|
|||||||||||||||||||||||| || || || |||| |||||| |||| |||||| |||||||||| |||| ||||||| ||||||||||||| |
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|
| T |
923858 |
aacaagagcttcaagcctttccaagtaagacaactcacagaatgc------aaccttaaccacttgtttcacaacacaagtggcaacccctttaccccaa |
923951 |
T |
|
| Q |
418 |
tatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcgt |
517 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||| ||||||| || ||| | ||||||| ||||| | || ||||||||| ||| |||| | |
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|
| T |
923952 |
tatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaacacacccaattgcacgatcat |
924051 |
T |
|
| Q |
518 |
tatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccc---cccagaactt |
614 |
Q |
| |
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| ||||||||||||||| | |||| ||||| || ||||||| |||||||||||||| | || ||||||||||| |||||| |||||||| |
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|
| T |
924052 |
tgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatcatccttgctggtgtagagttcccaagagcagaactt |
924151 |
T |
|
| Q |
615 |
ggccactttttc |
626 |
Q |
| |
|
|||||||||||| |
|
|
| T |
924152 |
ggccactttttc |
924163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 172 - 626
Target Start/End: Original strand, 935203 - 935651
Alignment:
| Q |
172 |
aatcatagttggggatcggtaaagagaacactggagatgatcatatctctattttttcctttcatgagcaaatatttcctaagaactccctctttttgga |
271 |
Q |
| |
|
||||||||||| |||| ||||| |||| |||| | |||||||||||||| |||||||||| | || | ||| |||||||||| ||||||||||| | |
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|
| T |
935203 |
aatcatagttgaagatcagtaaaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatacttcctaagaagcccctctttttgaa |
935302 |
T |
|
| Q |
272 |
aaccagctttctccaaaactctttgagacccagcattttccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaac |
371 |
Q |
| |
|
||||| ||||||| | ||| |||| |||||| |||| |||| |||||||||||||| |||||||||||| || ||||||||||||||||| | |
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|
| T |
935303 |
aaccaactttctcaagtactttttgcgacccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaa------c |
935396 |
T |
|
| Q |
372 |
cataaccatttgtttcacagcacatgtggcaatccctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtca |
471 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935397 |
cttaaccatttgtttcacagcacatgtggcaatccctttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtca |
935496 |
T |
|
| Q |
472 |
taaagtgaactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagt |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935497 |
taaagtgaactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagt |
935596 |
T |
|
| Q |
572 |
tgatgccttggtctttgctggtgtaaggttccccccagaacttggccactttttc |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
935597 |
tgatgccttggtctttgctggtgtaaggttccccccagaacttggccactttttc |
935651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 208 - 626
Target Start/End: Original strand, 925777 - 926198
Alignment:
| Q |
208 |
atgatcatatctctattttttcctttcatgagcaaatatttcctaagaactccctctttttggaaaccagctttctccaaaactctttgagacccagcat |
307 |
Q |
| |
|
|||||||||||||| |||||||||| | || | ||| || |||||||||||||||||||| |||||| |||| || | |||||||| |||||| ||| |
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|
| T |
925777 |
atgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctctttttgaaaaccaactttttcaagtactctttgtgacccaacat |
925876 |
T |
|
| Q |
308 |
tttccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccc |
407 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
925877 |
tatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacacgtggcaatccc |
925976 |
T |
|
| Q |
408 |
tttaccccaatatttagaggctagaacatacccaatttctgcacatctgttcctactcttgtcataaagtgaactggaggacaacttaatacacccaata |
507 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||| ||||| |||| ||||||||| ||| |||||||||||||||||||| |
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|
| T |
925977 |
tttaccccagtatttagaggctagaacataaccaatttctgcacatttgtacctgctcttatcatgaagtgaactcgagaacaacttaatacacccaata |
926076 |
T |
|
| Q |
508 |
gcatgatcgttatggcatattgctttgca---acgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaaggttccc |
604 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| | | | | ||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
926077 |
acatgatcattatggcatattgctttgcattgtagtagatattcactttctatattttcaatgaagttgatgccttggtctttgctggtgtaaggttccc |
926176 |
T |
|
| Q |
605 |
cccagaacttggccactttttc |
626 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
926177 |
cccagaacttggccactttttc |
926198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 137 - 426
Target Start/End: Original strand, 928038 - 928321
Alignment:
| Q |
137 |
agggtgaaaattctcctatattttccaaacaattgaatcatagttggggatcggtaaagagaacactggagatgatcatatctctattttttcctttcat |
236 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||| |||||||||||||| |||| || | |||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
928038 |
agggtgaatattttcctatgatttccaaacaaatgaatcatagttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcat |
928137 |
T |
|
| Q |
237 |
gagcaaatatttcctaagaactccctctttttggaaaccagctttctccaaaactctttgagacccagcattttccacatcaacaagagcttcaagcctt |
336 |
Q |
| |
|
|| |||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
928138 |
gaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctt |
928237 |
T |
|
| Q |
337 |
tccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttaccccaatatttagag |
426 |
Q |
| |
|
||||| || ||||||||| |||||| || | |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
928238 |
tccaagtacgaaaattcatcgaatgc------aatcttaacaatttgtttcacagcacatgtgacaatccctttaccccaatatttagag |
928321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 158 - 626
Target Start/End: Original strand, 938978 - 939443
Alignment:
| Q |
158 |
tttccaaacaattgaatcatagttggggatcggtaaagagaacactggagatgatcatatctctattttttcctttcatgagcaaatatttcctaagaac |
257 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||| | ||||||||| | || ||||||||||| ||||||||||||||| |||||| |||| |||| |
|
|
| T |
938978 |
tttccaaacaaatgaatcatagttggagatcagtagaaagaacactgaaaataatcatatctctgctttttcctttcatgaccaaatacttcccaagagt |
939077 |
T |
|
| Q |
258 |
tccctctttttggaaaccagctttctccaaaactctttgagacccagcattttccacatcaacaagagcttcaagcctttccaaatatgaaaattcactg |
357 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||| |||||||| | ||| || |||||| |
|
|
| T |
939078 |
tccctccttttggaaaccagctttctccaaaaccctttgagatccaacattttccacatcaacaaaagcttcaactctttccaagtgtgacaactcactg |
939177 |
T |
|
| Q |
358 |
aatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttaccccaatatttagaggctagaacatacccaatttctgcacatctgt |
457 |
Q |
| |
|
||||| |||| |||| | |||||||||| || | ||||| || ||||||||||| |||||||||||||||||||| ||| ||||||| | ||| |
|
|
| T |
939178 |
aatgc------aaccttaactacttgtttcacaacatacgtggctattcctttaccccagtatttagaggctagaacataggcaagttctgcagttttgt |
939271 |
T |
|
| Q |
458 |
tcctactcttgtcataaagtgaactggaggacaacttaatacacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccat |
557 |
Q |
| |
|
|||| || || |||| | |||| || || || || || ||||||||| ||| |||| |||||||||||||||| | |||| ||||| || || |
|
|
| T |
939272 |
tcctgcttttatcatgaggtgatcttgatttcagagaaacacggccaatagcacgattgttaaggcatattgctttgcaccatagaaacttgtttggtat |
939371 |
T |
|
| Q |
558 |
atttttgatgaagttgatgccttggtctttgctggtgtaaggttccc---cccagaacttggccactttttc |
626 |
Q |
| |
|
||||| |||||| |||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
939372 |
attttcaatgaagctgatgccttgttctttgctggtgtatggttcccaagagcagaacttggccactttttc |
939443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 256 - 461
Target Start/End: Original strand, 940110 - 940308
Alignment:
| Q |
256 |
actccctctttttggaaaccagctttctccaaaactctttgagacccagcattttccacatcaacaagagcttcaagcctttccaaatatgaaaattcac |
355 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||| |||||||| | ||||||||||| | ||| |||||||||||||| | || ||| |||| |
|
|
| T |
940110 |
actccttccttttggaaaccagctttctccagcactctcagagacccaacgttttccacatctaataga--ttcaagcctttccatgtgtggaaactcac |
940207 |
T |
|
| Q |
356 |
tgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttac-cccaatatttagaggctagaacatacccaatttctgcacatc |
454 |
Q |
| |
|
||||||||| || |||| | |||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||| |||| |||| ||||| |
|
|
| T |
940208 |
tgaatgcaa------ccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttatagcctagaacatagccaagttctacacatt |
940301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 604
Target Start/End: Original strand, 928387 - 928493
Alignment:
| Q |
498 |
acacccaatagcatgatcgttatggcatattgctttgcaacgtagatacttgcctgccatatttttgatgaagttgatgccttggtctttgctggtgtaa |
597 |
Q |
| |
|
||| ||||||||| |||| ||| ||||||||||||||||| ||| |||||| | | ||| ||| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
928387 |
acagccaatagcacgatcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctggtgtaa |
928486 |
T |
|
| Q |
598 |
ggttccc |
604 |
Q |
| |
|
||||||| |
|
|
| T |
928487 |
ggttccc |
928493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 46648033 - 46648166
Alignment:
| Q |
213 |
catatctctattttttcctttcatgagcaaatatttcctaagaactccctctttttggaaaccagctttctccaaaactctttgagacccagcattttcc |
312 |
Q |
| |
|
|||||||||| ||||||| || ||| || |||||| || ||||| ||||| |||| |||||||| |||||||| ||||| ||||| | ||||||| |
|
|
| T |
46648033 |
catatctctactttttcccttgctgaacagatattttctgagaacaccctccctttgaaaaccagccttctccaatactctctgagaagccatattttcc |
46648132 |
T |
|
| Q |
313 |
acatcaacaagagcttcaagcctttccaaatatg |
346 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| |
|
|
| T |
46648133 |
acatcaacttgagcttcaagcctttccaagtatg |
46648166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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