View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19918_low_2 (Length: 504)
Name: NF19918_low_2
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19918_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 31089562 - 31089087
Alignment:
| Q |
13 |
aatatgcttgaaaatgatatatactgttattttataagcaaatctcaatgtctgttttttacacatattcgatgtgggatttcttttggtataccaaaca |
112 |
Q |
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| T |
31089562 |
aatatgcttgtaaatgatatatactgttattttataagcaaatctcaatgtctgttttttacacatattcgatgtgggatttcttttggtataccaaaca |
31089463 |
T |
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| Q |
113 |
gctgaacagaaagtcaaacatctaaaggaaagttacaacagaagaaacttcatcatctaaacgttnnnnnnnnnnnnn--ttattatttaagtagtcatg |
210 |
Q |
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| T |
31089462 |
gctgaacagaaagtcaaacatctaaaggaaagttacaacagaagaaacttcatcatctaaacgttacacacacacacacattattatttaagtagtcatg |
31089363 |
T |
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| Q |
211 |
gtttagcatgctaaaggggcagctttagttttggtttagctttgccatcattaccttcttaattttgcaggttgaagtattttggattgtgttgcaagtt |
310 |
Q |
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| T |
31089362 |
gtttagcatgctaaaggggcagctttagttttggtttagctttgccatcattaccttcttaattttgcaggttgatgtattttggattgtgttgcaagtt |
31089263 |
T |
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| Q |
311 |
ttttatgtatggatgtctattcacattttttaaatatgatatatgtgtaatttcccatctatgcacaacaaattcatatcttacaagcatatgtagaata |
410 |
Q |
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| T |
31089262 |
ttttatgtatggatgtctattcacattttttaaatatgatatatgtgtaatttcccatctatgcacaacaaattcatatcttacaagcatatgtagaata |
31089163 |
T |
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| Q |
411 |
gaaaataacaagaactcaactataaatattacaaattacaggaagataaatacatggttatcataaacacgataaa |
486 |
Q |
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| T |
31089162 |
gaaaataacaagaactcaactataaatattacaaattacaggaagatacatacatggatatcataaacacgataaa |
31089087 |
T |
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