View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19918_low_6 (Length: 428)

Name: NF19918_low_6
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19918_low_6
NF19918_low_6
[»] chr4 (4 HSPs)
chr4 (1-202)||(25109381-25109581)
chr4 (283-416)||(25109171-25109303)
chr4 (102-176)||(24156568-24156642)
chr4 (94-178)||(19149844-19149928)
[»] chr3 (3 HSPs)
chr3 (1-179)||(43367662-43367840)
chr3 (126-184)||(49147676-49147734)
chr3 (6-79)||(47158821-47158894)
[»] chr6 (7 HSPs)
chr6 (1-179)||(28493699-28493877)
chr6 (1-179)||(29806108-29806286)
chr6 (123-184)||(16498196-16498257)
chr6 (102-177)||(31930700-31930775)
chr6 (6-79)||(6180311-6180384)
chr6 (54-136)||(7469845-7469927)
chr6 (123-184)||(9756867-9756928)
[»] chr2 (4 HSPs)
chr2 (123-184)||(7026851-7026912)
chr2 (123-184)||(35297213-35297274)
chr2 (93-176)||(44024264-44024347)
chr2 (123-184)||(14688740-14688801)
[»] chr1 (3 HSPs)
chr1 (123-184)||(44094031-44094092)
chr1 (99-178)||(45516395-45516474)
chr1 (49-135)||(42767690-42767776)
[»] chr7 (1 HSPs)
chr7 (123-184)||(42128586-42128647)
[»] chr5 (2 HSPs)
chr5 (123-184)||(31112082-31112143)
chr5 (6-130)||(5122864-5122988)
[»] scaffold0015 (1 HSPs)
scaffold0015 (123-184)||(14149-14210)
[»] chr8 (4 HSPs)
chr8 (123-184)||(29259354-29259415)
chr8 (6-78)||(13075227-13075299)
chr8 (6-73)||(40736660-40736727)
chr8 (99-178)||(13821480-13821557)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 25109581 - 25109381
Alignment:
Q  1 aaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctc 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||    
T  25109581 aaaatatcaaagac-acatgagttctcgaaatttcttccttcaccattcgctcagagaaggcaatcagtgtgcggattttaggaccaaacttagagcctc 25109483  T
Q  101 gaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctcttcctgagagcctaacct 200  Q
    ||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||||| |||||||||||||||| | |||||||| |||||||||    
T  25109482 gaatgatgtcgagttgtctattcactcttcttcttcagaggacctactgcctctactcaagacggatgaattaggagtttttttcctgagggcctaacct 25109383  T
Q  201 cg 202  Q
    ||    
T  25109382 cg 25109381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 283 - 416
Target Start/End: Complemental strand, 25109303 - 25109171
Alignment:
Q  283 tcacgaagtgaaaaattgccactttctctgacgcaattttactgaagattatattaaataaataaaacatacatcacctttataatacaaacacaaaact 382  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25109303 tcacgaagt-aaaaattgccactttctctgacgcaattttactgaagattatattaaataaataaaacatacatcacctttataatacaaacaaaaaact 25109205  T
Q  383 caattatactctcgagttatgctatataaatgat 416  Q
    ||||||||||||||||||||||||||||||||||    
T  25109204 caattatactctcgagttatgctatataaatgat 25109171  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 24156642 - 24156568
Alignment:
Q  102 aatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattagga 176  Q
    |||||||| |||||||| || ||||||||||| || |||||||||||||||||| | |||| |||||||||||||    
T  24156642 aatgatgttgagttgtccatccactcttctccgccggaggacctgctgcctctgttaaagacggatgaattagga 24156568  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 19149928 - 19149844
Alignment:
Q  94 gagtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagt 178  Q
    |||| |||||||||||  || |||| ||||||||||||||||| ||||||||| |||||||||| | ||  ||||||||||||||    
T  19149928 gagtttcgaatgatgttaagctgtccattcactcttctcctccggaggacctgttgcctctgctaaggacagatgaattaggagt 19149844  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 43367662 - 43367840
Alignment:
Q  1 aaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctc 100  Q
    |||| |||||||||  ||||||| || ||||||||| |||||| | |||||||||||||||||||||| ||||||| |||  || |||  |  |||| ||    
T  43367662 aaaacatcaaagacatcatgagtactagaaatttctcccttcagcattcgctcagagaaggcaatcagcgtgcggactttgtaaccaagctaggagtttc 43367761  T
Q  101 gaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagtt 179  Q
    |||||||| ||||||||| || |||||||| |||||| |||||||||| |||||||| | || ||||||| ||||||||    
T  43367762 gaatgatgacgagttgtcaatccactcttcacctccaaaggacctgctacctctgcttaggacggatgaactaggagtt 43367840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 49147734 - 49147676
Alignment:
Q  126 tcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    |||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||    
T  49147734 tcttctcctccagaggacctgctgcctctgcttaggacggatgaattaggagtcctctt 49147676  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 47158894 - 47158821
Alignment:
Q  6 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattt 79  Q
    |||||||||| ||| ||| |  |||||||||  ||||||| |||||| |||||||||||||| ||||| |||||    
T  47158894 atcaaagacctcatcagtgcgtgaaatttctctcttcaccattcgctaagagaaggcaatcaatgtgcagattt 47158821  T

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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 28493699 - 28493877
Alignment:
Q  1 aaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctc 100  Q
    |||| |||||||||  ||||||| || ||||||||| |||||  | ||| ||||||||||||||||||||||| || |||     |||  || |||  ||    
T  28493699 aaaacatcaaagacatcatgagtactagaaatttctcccttcggcattcactcagagaaggcaatcagtgtgccgactttctggccaagcttcgagcttc 28493798  T
Q  101 gaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagtt 179  Q
    |||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||| | |||||||||  ||||||||    
T  28493799 gaatgatgacgagttgtctatccactcttcacctccagagaacctgctgcctctgcttaggatggatgagctaggagtt 28493877  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 29806108 - 29806286
Alignment:
Q  1 aaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctc 100  Q
    |||| |||||||||  ||||||| || ||||||||| |||||  | ||| ||||||||||||||||||||||| || |||     |||  || |||  ||    
T  29806108 aaaacatcaaagacatcatgagtactagaaatttctcccttcggcattcactcagagaaggcaatcagtgtgccgactttctggccaagcttcgagcttc 29806207  T
Q  101 gaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagtt 179  Q
    |||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||| | |||||||||  ||||||||    
T  29806208 gaatgatgacgagttgtctatccactcttcacctccagagaacctgctgcctctgcttaggatggatgagctaggagtt 29806286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 16498257 - 16498196
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    ||||||||||||||||||||||||||||||| ||| | ||  |||||||||||||| |||||    
T  16498257 cactcttctcctccagaggacctgctgcctccgcttaggacagatgaattaggagtcctctt 16498196  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 31930775 - 31930700
Alignment:
Q  102 aatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggag 177  Q
    |||||||| |||| ||| ||||||||||| ||||| ||||||||||| |||||| | | || ||||||||||||||    
T  31930775 aatgatgttgagtcgtccattcactcttcccctccggaggacctgctacctctgataaggacggatgaattaggag 31930700  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 6180311 - 6180384
Alignment:
Q  6 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattt 79  Q
    |||||||||| ||| ||| | ||||||||||  ||||||| |||||| |||||||||||||| ||||| |||||    
T  6180311 atcaaagacctcatcagtgcgcgaaatttctctcttcaccattcgctaagagaaggcaatcaatgtgcagattt 6180384  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 7469927 - 7469845
Alignment:
Q  54 agagaaggcaatcagtgtgcggattttagaatcaaatttagagtctcgaatgatgtcgagttgtctattcactcttctcctcc 136  Q
    ||||| |||||||| ||||||||||| |   ||||| |||||  ||||| ||||||||| ||| | |||||||||||||||||    
T  7469927 agagagggcaatcaatgtgcggatttcatggtcaaacttagaacctcgactgatgtcgacttgacaattcactcttctcctcc 7469845  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 9756928 - 9756867
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    |||||||||||| || ||||| |||||||||| || | || ||||||||||||||| |||||    
T  9756928 cactcttctccttcataggacatgctgcctcttcttaggacggatgaattaggagtcctctt 9756867  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 7026912 - 7026851
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    ||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||    
T  7026912 cactcttctcctccagaggacctgctgcctctgcttaggacggatgaattaggagtcctctt 7026851  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 35297213 - 35297274
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    |||||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||    
T  35297213 cactcttctccttcagaggacctgctgcctctgcttaggacggatgaattaggagttctctt 35297274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 44024264 - 44024347
Alignment:
Q  93 agagtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattagga 176  Q
    ||||| || |||||||| ||| |||| || ||||||||||| || |||||||||||||||||| | |||| |||||||||||||    
T  44024264 agagtttctaatgatgttgagctgtccatccactcttctccaccggaggacctgctgcctctgttaaagacggatgaattagga 44024347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 14688740 - 14688801
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    ||||||||||||| ||||||||||||||||||| | | || ||||||||||||||| |||||    
T  14688740 cactcttctcctctagaggacctgctgcctctggttaggacggatgaattaggagtcctctt 14688801  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 44094031 - 44094092
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    ||||||||||||||||||||||||||||||||||| | || |||||| |||||||| |||||    
T  44094031 cactcttctcctccagaggacctgctgcctctgcttaggacggatgatttaggagtcctctt 44094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 45516474 - 45516395
Alignment:
Q  99 tcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagt 178  Q
    ||||||||||| || ||| || | ||||||||||||| ||||||||| ||||||||||| | || |||||||||||||||    
T  45516474 tcgaatgatgttgaattgactctccactcttctcctcgagaggacctactgcctctgcttaggacggatgaattaggagt 45516395  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 42767690 - 42767776
Alignment:
Q  49 cgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctcgaatgatgtcgagttgtctattcactcttctcctc 135  Q
    |||| ||||| |||||||| |||||||||||||    ||||||||||| ||||| ||||||||| ||| | ||||||||||||||||    
T  42767690 cgcttagagagggcaatcaatgtgcggattttatggccaaatttagagcctcgactgatgtcgacttgacaattcactcttctcctc 42767776  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 42128586 - 42128647
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    |||||||||| |||||||||||||||||||||||| | ||  |||||||||||||| |||||    
T  42128586 cactcttctcttccagaggacctgctgcctctgcttaggacagatgaattaggagtcctctt 42128647  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 31112143 - 31112082
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    |||| |||||||||||||||||||||||| ||||| | || ||||||||||||||| |||||    
T  31112143 cactattctcctccagaggacctgctgccgctgcttaggacggatgaattaggagtcctctt 31112082  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 5122864 - 5122988
Alignment:
Q  6 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctcgaatg 105  Q
    |||||||||| |||||||||  ||||||||   ||||| | ||| ||||||||||||||||||||||| ||||  |     ||  |||||||||||||||    
T  5122864 atcaaagacctcatgagttcaagaaatttcactcttcagcattcactcagagaaggcaatcagtgtgcagattacatggctaagcttagagtctcgaatg 5122963  T
Q  106 atgtcgagttgtctattcactcttc 130  Q
    ||||||| |||  ||||||||||||    
T  5122964 atgtcgatttggttattcactcttc 5122988  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 14149 - 14210
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    ||||||||||||||| ||||| ||| ||||||||| | || ||||||||||||||| |||||    
T  14149 cactcttctcctccaaaggacatgcagcctctgcttaggacggatgaattaggagtcctctt 14210  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 29259354 - 29259415
Alignment:
Q  123 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 184  Q
    ||||||||||||||| ||||| ||| ||||||||| | || ||||||||||||||| |||||    
T  29259354 cactcttctcctccaaaggacatgccgcctctgcttaggacggatgaattaggagtcctctt 29259415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 13075299 - 13075227
Alignment:
Q  6 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggatt 78  Q
    |||||||||| || ||||||| ||||||||    |||| | ||||||||||||||||||||||||||| ||||    
T  13075299 atcaaagacctcacgagttctagaaatttcactgttcaacattcgctcagagaaggcaatcagtgtgcagatt 13075227  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 40736727 - 40736660
Alignment:
Q  6 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 73  Q
    |||||||||| |||  || | ||||||||||  ||||||| |||||| ||||||||||||||||||||    
T  40736727 atcaaagacctcatcggtgcgcgaaatttctctcttcaccattcgctaagagaaggcaatcagtgtgc 40736660  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 13821480 - 13821557
Alignment:
Q  99 tcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagt 178  Q
    ||||||||||| || ||| || | |||||||||||   ||||||||||||||||||||| | || | |||||||||||||    
T  13821480 tcgaatgatgttgaattgactctccactcttctccg--agaggacctgctgcctctgcttaggacgaatgaattaggagt 13821557  T

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