View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19918_low_8 (Length: 393)
Name: NF19918_low_8
Description: NF19918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19918_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 17351673 - 17352030
Alignment:
| Q |
18 |
ctcaatgacaacaaggttatgataataaattctatgatcaaaataaaagatgcatgagcaacatgtggttggtgcaagtgtgagtagtataatagactta |
117 |
Q |
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| T |
17351673 |
ctcaatgacaactaggttatgataataaattctatgatcaaaataaaatatgcatgaacaacatgtggttggtgcaagtgtgagtagtataatagactta |
17351772 |
T |
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| Q |
118 |
aaaatagtaaaattctaagtaagattttaccgaaatgaactctatagctagcttgtgcctatatgaagaaaatttaattgagatggaagagtctattata |
217 |
Q |
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| T |
17351773 |
aaaatagtaaaattctaagtaagattttaccgatatgaactctatagctagcttgtgcctatatgaagaaaatttaattgagatggaagagtctattata |
17351872 |
T |
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| Q |
218 |
tatgtgaacaaaaaatttaataattga---------------acaaaatgtactttgagcatggttcaactactttgaagtttgaaccattcgaattaaa |
302 |
Q |
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| T |
17351873 |
tatgtgaacaaaatatttaataatcgaaccagaaacaaatttacaaaatgtactctgagcatggttcaactacttcgaagtttgaaccattcgaattaaa |
17351972 |
T |
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| Q |
303 |
gaaacaaggatcaaatctctcaaatacttaaaccgtaaacggtactggttcaatgttc |
360 |
Q |
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| T |
17351973 |
gaaacaaggatcaaatctctcaaatacttaaaccgtaaacggtactggttcaatgttc |
17352030 |
T |
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