View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19919_high_3 (Length: 409)

Name: NF19919_high_3
Description: NF19919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19919_high_3
NF19919_high_3
[»] chr6 (6 HSPs)
chr6 (1-109)||(2996224-2996333)
chr6 (251-286)||(16193825-16193860)
chr6 (245-294)||(2996055-2996104)
chr6 (251-287)||(15057111-15057147)
chr6 (251-279)||(28606479-28606507)
chr6 (251-287)||(28606567-28606603)
[»] scaffold0011 (1 HSPs)
scaffold0011 (36-107)||(13415-13486)
[»] chr8 (4 HSPs)
chr8 (251-286)||(31470840-31470875)
chr8 (251-287)||(3647481-3647517)
chr8 (251-286)||(7931551-7931586)
chr8 (251-294)||(32857068-32857111)
[»] chr4 (8 HSPs)
chr4 (251-286)||(11392394-11392429)
chr4 (245-286)||(30023635-30023676)
chr4 (245-288)||(337030-337073)
chr4 (246-284)||(22435442-22435480)
chr4 (245-287)||(35297495-35297537)
chr4 (256-294)||(43063537-43063575)
chr4 (251-280)||(29821361-29821390)
chr4 (245-286)||(46321425-46321466)
[»] chr3 (6 HSPs)
chr3 (251-286)||(53299824-53299859)
chr3 (254-287)||(26960937-26960970)
chr3 (251-287)||(26960839-26960875)
chr3 (246-286)||(29081690-29081730)
chr3 (245-286)||(48342306-48342347)
chr3 (252-285)||(53299734-53299767)
[»] chr2 (6 HSPs)
chr2 (253-287)||(18182528-18182562)
chr2 (251-284)||(1355989-1356022)
chr2 (246-286)||(5095804-5095844)
chr2 (256-286)||(7755363-7755393)
chr2 (260-294)||(12918552-12918586)
chr2 (260-294)||(39819082-39819116)
[»] chr7 (5 HSPs)
chr7 (245-286)||(32315734-32315775)
chr7 (251-282)||(6980892-6980923)
chr7 (251-287)||(16648911-16648947)
chr7 (251-287)||(17623272-17623308)
chr7 (255-287)||(27385931-27385963)
[»] chr5 (5 HSPs)
chr5 (251-287)||(34394691-34394727)
chr5 (246-292)||(4376371-4376417)
chr5 (260-294)||(29385390-29385424)
chr5 (251-287)||(5998555-5998591)
chr5 (255-287)||(20986462-20986494)
[»] chr1 (6 HSPs)
chr1 (251-286)||(10449475-10449510)
chr1 (251-286)||(44291144-44291179)
chr1 (256-286)||(4579195-4579225)
chr1 (254-288)||(44382433-44382467)
chr1 (245-285)||(44801780-44801821)
chr1 (254-294)||(421227-421267)
[»] scaffold0343 (1 HSPs)
scaffold0343 (255-288)||(12307-12340)
[»] scaffold0312 (1 HSPs)
scaffold0312 (254-294)||(9304-9344)
[»] scaffold0031 (1 HSPs)
scaffold0031 (251-287)||(105402-105438)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 2996333 - 2996224
Alignment:
Q  1 ctttcatctccttttgccttggtggacctc-tgtgttcgtgacttttggagaagtgtaatttgcttttgcttgccactatcttgtattgattgctccaat 99  Q
    ||||| |||||||||||||| |||| || | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2996333 ctttcgtctccttttgcctttgtgggccccatgtgttcgtgacttttggagaagtgtgatttgcttttgcttgccactagcttgtattgattgctccaat 2996234  T
Q  100 gtgctattgt 109  Q
    ||||||||||    
T  2996233 gtgctattgt 2996224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 16193825 - 16193860
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||||||||||||||||||||||| ||||||||||    
T  16193825 ttgtacacttgtgacattgtggttgaccaatgtcac 16193860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 2996104 - 2996055
Alignment:
Q  245 gttttattgtacacttgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    ||||| |||||||||||||| |||| ||||  ||||||||||||||||||    
T  2996104 gttttgttgtacacttgtgatattggggttaaccaatgtcacaaatgtca 2996055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 15057111 - 15057147
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  15057111 ttgtacacttgtgatattttggttggccaatgtcaca 15057147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 28606507 - 28606479
Alignment:
Q  251 ttgtacacttgtgacattgtggttggcca 279  Q
    |||||||||||||||||||||||||||||    
T  28606507 ttgtacacttgtgacattgtggttggcca 28606479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 28606567 - 28606603
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||||||||  |||||||||||||||||||||||||    
T  28606567 ttgtacacttaagacattgtggttggccaatgtcaca 28606603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 13486 - 13415
Alignment:
Q  36 tcgtgacttttggagaagtgtaatttgcttttgcttgccactatcttgtattgattgctccaatgtgctatt 107  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| |||||| |||||    
T  13486 tcgtgacttttggagaagtgtgatttgtttttgcttgccactagcttgtgttgattgcttcaatgttctatt 13415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 31470840 - 31470875
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||||||||||||||||||||||||||||||||||    
T  31470840 ttgtacacttgtgacattgtggttggccaatgtcac 31470875  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 3647481 - 3647517
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3647481 ttgtacacttgtgtcattgtggttggccaatgtcaca 3647517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 7931586 - 7931551
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcac 286  Q
    |||||||||||||||||||||||||| |||||||||    
T  7931586 ttgtacacttgtgacattgtggttggtcaatgtcac 7931551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 32857068 - 32857111
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    |||||||||||||||||||||||||||| ||||||  |||||||    
T  32857068 ttgtacacttgtgacattgtggttggcctatgtcatcaatgtca 32857111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 11392394 - 11392429
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||||||||||||||||||||||||||||||||||    
T  11392394 ttgtacacttgtgacattgtggttggccaatgtcac 11392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 30023635 - 30023676
Alignment:
Q  245 gttttattgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  30023635 gtttttttgtacacttgtgacattgtggttggtcaatgtcac 30023676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 337030 - 337073
Alignment:
Q  245 gttttattgtacacttgtgacattgtggttggccaatgtcacaa 288  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||    
T  337030 gtttttttgtacacttttgacattgtggttggtcaatgtcacaa 337073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 22435442 - 22435480
Alignment:
Q  246 ttttattgtacacttgtgacattgtggttggccaatgtc 284  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  22435442 tttttttgtacacttgtgacattgtggttggtcaatgtc 22435480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 35297537 - 35297495
Alignment:
Q  245 gttttattgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||    
T  35297537 gtttttttgtacacttgtgatattgtggttggtcaatgtcaca 35297495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 43063575 - 43063537
Alignment:
Q  256 cacttgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  43063575 cacttgtgacattgtggttggctaatgtcaccaatgtca 43063537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 29821390 - 29821361
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaa 280  Q
    ||||||||||||||||||||||||||||||    
T  29821390 ttgtacacttgtgacattgtggttggccaa 29821361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 46321425 - 46321466
Alignment:
Q  245 gttttattgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||| ||||||| |||||||||||||||||| |||||||||    
T  46321425 gtttttttgtacagttgtgacattgtggttggtcaatgtcac 46321466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 53299824 - 53299859
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||||||||||||||||||||||||||||||||||    
T  53299824 ttgtacacttgtgacattgtggttggccaatgtcac 53299859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 26960937 - 26960970
Alignment:
Q  254 tacacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||||||||||||||||||||||||||||||||    
T  26960937 tacacttgtgacattgtggttggccaatgtcaca 26960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 26960875 - 26960839
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26960875 ttgtacacttgtgacattgtggttggctaatgtcaca 26960839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 29081690 - 29081730
Alignment:
Q  246 ttttattgtacacttgtgacattgtggttggccaatgtcac 286  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  29081690 tttttttgtacacttgtgacattgtggttgaccaatgtcac 29081730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 48342306 - 48342347
Alignment:
Q  245 gttttattgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||    
T  48342306 gtttttttgtacatttgtgacattgtggttggccaatatcac 48342347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 53299767 - 53299734
Alignment:
Q  252 tgtacacttgtgacattgtggttggccaatgtca 285  Q
    ||||||| ||||||||||||||||||||||||||    
T  53299767 tgtacacctgtgacattgtggttggccaatgtca 53299734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 18182562 - 18182528
Alignment:
Q  253 gtacacttgtgacattgtggttggccaatgtcaca 287  Q
    |||||||||||||||||||||||||||||||||||    
T  18182562 gtacacttgtgacattgtggttggccaatgtcaca 18182528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 1355989 - 1356022
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtc 284  Q
    ||||||||||||||||||||||||||||||||||    
T  1355989 ttgtacacttgtgacattgtggttggccaatgtc 1356022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 5095804 - 5095844
Alignment:
Q  246 ttttattgtacacttgtgacattgtggttggccaatgtcac 286  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  5095804 tttttttgtacatttgtgacattgtggttggccaatgtcac 5095844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 7755393 - 7755363
Alignment:
Q  256 cacttgtgacattgtggttggccaatgtcac 286  Q
    |||||||||||||||||||||||||||||||    
T  7755393 cacttgtgacattgtggttggccaatgtcac 7755363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 12918586 - 12918552
Alignment:
Q  260 tgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  12918586 tgtgacattgtggttggccaatgtcaccaatgtca 12918552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 39819116 - 39819082
Alignment:
Q  260 tgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  39819116 tgtgacattgtggttggccaatgtcaccaatgtca 39819082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 32315775 - 32315734
Alignment:
Q  245 gttttattgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  32315775 gtttttttgtacaattgtgacattgtggttggccaatgtcac 32315734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 282
Target Start/End: Complemental strand, 6980923 - 6980892
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatg 282  Q
    ||||||||||||||||||||||||||||||||    
T  6980923 ttgtacacttgtgacattgtggttggccaatg 6980892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 16648911 - 16648947
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  16648911 ttgtacacttgtgaaattgtggtttgccaatgtcaca 16648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 17623272 - 17623308
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  17623272 ttgtacacttgtgatattgtggtttgccaatgtcaca 17623308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 27385931 - 27385963
Alignment:
Q  255 acacttgtgacattgtggttggccaatgtcaca 287  Q
    |||||||||||||||||||||||||| ||||||    
T  27385931 acacttgtgacattgtggttggccaacgtcaca 27385963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 34394727 - 34394691
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34394727 ttgtacacttgtgacattgtggttgaccaatgtcaca 34394691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 4376417 - 4376371
Alignment:
Q  246 ttttattgtacacttgtgacattgtggttggccaatgtcacaaatgt 292  Q
    |||| ||||||||||||||||||||||||| |||||| ||| |||||    
T  4376417 tttttttgtacacttgtgacattgtggttgaccaatggcacgaatgt 4376371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 29385390 - 29385424
Alignment:
Q  260 tgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    ||||||||||||||||||||||||||| |||||||    
T  29385390 tgtgacattgtggttggccaatgtcaccaatgtca 29385424  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 5998591 - 5998555
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    |||||||||| |||||||||||||| |||||||||||    
T  5998591 ttgtacacttctgacattgtggttgaccaatgtcaca 5998555  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 20986494 - 20986462
Alignment:
Q  255 acacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||||||||||||||||||| |||||||||||    
T  20986494 acacttgtgacattgtggttgaccaatgtcaca 20986462  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 10449510 - 10449475
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcac 286  Q
    |||||||||||||||||||||||||| |||||||||    
T  10449510 ttgtacacttgtgacattgtggttggtcaatgtcac 10449475  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 44291144 - 44291179
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcac 286  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44291144 ttgtacacttgtgacattgtggttgaccaatgtcac 44291179  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 4579225 - 4579195
Alignment:
Q  256 cacttgtgacattgtggttggccaatgtcac 286  Q
    |||||||||||||||||||||||||||||||    
T  4579225 cacttgtgacattgtggttggccaatgtcac 4579195  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 44382433 - 44382467
Alignment:
Q  254 tacacttgtgacattgtggttggccaatgtcacaa 288  Q
    ||||||||||| |||||||||||||||||||||||    
T  44382433 tacacttgtgatattgtggttggccaatgtcacaa 44382467  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 44801821 - 44801780
Alignment:
Q  245 gttttattgtacactt-gtgacattgtggttggccaatgtca 285  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  44801821 gtttttttgtacactttgtgacattgtggttggccaatgtca 44801780  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 421227 - 421267
Alignment:
Q  254 tacacttgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    ||||||| ||||||||||||||||||||||| | |||||||    
T  421227 tacacttatgacattgtggttggccaatgtcgccaatgtca 421267  T

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Target: scaffold0343 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 12307 - 12340
Alignment:
Q  255 acacttgtgacattgtggttggccaatgtcacaa 288  Q
    |||||||||||||||||||||| |||||||||||    
T  12307 acacttgtgacattgtggttggtcaatgtcacaa 12340  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 9344 - 9304
Alignment:
Q  254 tacacttgtgacattgtggttggccaatgtcacaaatgtca 294  Q
    ||||||| ||||||||||||||||||||||| | |||||||    
T  9344 tacacttatgacattgtggttggccaatgtcgccaatgtca 9304  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 105438 - 105402
Alignment:
Q  251 ttgtacacttgtgacattgtggttggccaatgtcaca 287  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  105438 ttgtacacttgtgacattgtgattggtcaatgtcaca 105402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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