View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19919_low_2 (Length: 556)
Name: NF19919_low_2
Description: NF19919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19919_low_2 |
 | |
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| [»] scaffold0005 (2 HSPs) |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 20 - 541
Target Start/End: Original strand, 32145854 - 32146381
Alignment:
| Q |
20 |
catggtaagaataggatggacgtatctttacataagtaagttatgagagattggaattcgcctctagtatggtaatcagggtaacgttcaagtcatcaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32145854 |
catggtaagaataggatggacgtatctttacataagtaagttatgagagattggaattcgcctctagtatggtaatcagggtaacgttcaagtcgtcaag |
32145953 |
T |
|
| Q |
120 |
tgtaataaccgatgttcgaagaaataggtactgctcaagagaagatggcaatactcaggctttatgcggatatgaagctctgaagattcaagttcagtat |
219 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32145954 |
tgtaataaccgatgttcgaataaataggtactgctcaggagaagatggcaatacttaggctttatccggatatgaagctctgaagattcaagttcagtat |
32146053 |
T |
|
| Q |
220 |
tcttggaaatgagggaaaagatgttgtcatgtgggtcaagaatccttcatgatttatgttatgcaataatgtatgt----ctaa--gatatacatataag |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
32146054 |
tcttggaaatgagggagaagatgttgtcatgtgggtcaagaatccttcatgatttatgttatgcaataatgtatgtatgtctaatcgatatacatataag |
32146153 |
T |
|
| Q |
314 |
ttaaagaggaaattgaaagaatccacccttgaagttagcagtgttgctacgaaggaagacacaattatcaagttttacacgatgtgatttatgccctctt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32146154 |
ttaaagaggaaattgaaagaatccacccttgaagttagcagtgttgttatgaaggaagacacaattatcaagttttacacgatgtgattcatgccctctt |
32146253 |
T |
|
| Q |
414 |
atgccatgcttgttaagtgataacgatacttgctataatattgttgaaccatgtttttatgactcctagagttaatgtatgtattaagggacttggaaac |
513 |
Q |
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| T |
32146254 |
atgccatgcttgttaagtgataacgatacttgctataatattgttgaaccatgtttttatgactcctagagttaaggtatgtattaagggacttggaaac |
32146353 |
T |
|
| Q |
514 |
gaagttattttttaaaacatgatatttc |
541 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
32146354 |
gaagttattttttaaaacatgatatttc |
32146381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 238 - 488
Target Start/End: Original strand, 1138 - 1387
Alignment:
| Q |
238 |
agatgttgtcatgtgggtcaagaatccttcatgatttatgttatgcaataatgtatgtctaagatatacatataagttaaagaggaaattgaaagaatcc |
337 |
Q |
| |
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|||||| |||||||| ||||| || | |||||||||||||||||| |||||| ||||| || |||||||||||||||||| | | || ||| || ||| |
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| T |
1138 |
agatgtcgtcatgtgagtcaacgattccacatgatttatgttatgcagtaatgtctgtctgaggtatacatataagttaaagtgaatatggaa-gactcc |
1236 |
T |
|
| Q |
338 |
acccttgaagttagcagtgttgctacgaaggaagacacaattatcaagttttacacgatgtgatttatgccctcttatgccatgcttgttaagtgataac |
437 |
Q |
| |
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|| | |||||| ||| | |||||||||||||| | | |||||| ||||||| |||| || | |||||||||||| ||||||||||||||| |
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| T |
1237 |
actcc-gaagttgagagttgtatcacgaaggaagacacggtcagtaagtttcgcacgatgcgattcatactctcttatgccatacttgttaagtgataat |
1335 |
T |
|
| Q |
438 |
gatacttgctataatattgttgaaccatg-tttttatgactcctagagttaa |
488 |
Q |
| |
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||||||||| || |||||||||||||||| || |||||||| |||||||||| |
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|
| T |
1336 |
gatacttgccatgatattgttgaaccatgcttcttatgacttctagagttaa |
1387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 238 - 511
Target Start/End: Original strand, 21333021 - 21333294
Alignment:
| Q |
238 |
agatgttgtcatgtgggtcaagaatccttcatgatttatgttatgcaataatgtatgtctaagatatacatataagttaaagaggaaattgaaagaatcc |
337 |
Q |
| |
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|||||| |||||||| |||||| || | |||||||||||||| ||| |||||| ||||| || |||||||||||||||||| | | || ||| || ||| |
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| T |
21333021 |
agatgtcgtcatgtgagtcaaggattccacatgatttatgttacgcagtaatgtctgtctgaggtatacatataagttaaagtgaatatggaa-gactcc |
21333119 |
T |
|
| Q |
338 |
acccttgaagttagcagtgttgctacgaaggaagacacaattatcaagttttacacgatgtgatttatgccctcttatgccatgcttgtt-aagtgataa |
436 |
Q |
| |
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|| | |||||| ||| | |||||||||||||| || || |||||| ||||| |||| | | |||||||||||| |||||| ||||||||| |
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| T |
21333120 |
actcc-gaagttgagagttgtatcacgaaggaagacacgatcattaagtttcgtgcgatgcgattcgtactctcttatgccatacttgtttaagtgataa |
21333218 |
T |
|
| Q |
437 |
cgatacttgctataatattgttgaaccatg-tttttatgactcctagagttaatgtatgtattaagggacttggaa |
511 |
Q |
| |
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||||||| || |||||||||||| ||| |||||||||||||||||||||| || | |||| ||||||||||| |
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|
| T |
21333219 |
tgatactttacatgatattgttgaactatgctttttatgactcctagagttaagatacgcattaggggacttggaa |
21333294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 95 - 312
Target Start/End: Complemental strand, 19689 - 19472
Alignment:
| Q |
95 |
tcagggtaacgttcaagtcatcaagtgtaataaccgatgttcgaagaaataggtactgctcaagagaagatggcaatactcaggctttatgcggatatga |
194 |
Q |
| |
|
||||||||| | || ||||||||||||||||||| | | | |||| ||| ||||||| ||| ||||||||| |||||||| || |||| || |||||| |
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| T |
19689 |
tcagggtaatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaggagaagatgacaatactcgagccttatccgaatatga |
19590 |
T |
|
| Q |
195 |
agctctgaagattcaagttcagtattcttggaaatgagggaaa-agatgttgtcatgtgggtcaagaatccttcatgatttatgttatgcaataatgtat |
293 |
Q |
| |
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|| ||||||||||||||||||||| | ||| ||| ||| ||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
19589 |
agttctgaagattcaagttcagtacttttg-aaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaataatgtat |
19491 |
T |
|
| Q |
294 |
gtctaagatatacatataa |
312 |
Q |
| |
|
|| |||||||||||||||| |
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|
| T |
19490 |
gtttaagatatacatataa |
19472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 396 - 488
Target Start/End: Complemental strand, 19392 - 19299
Alignment:
| Q |
396 |
tgtgatttatgccctcttatgccatgcttgttaagtgataacgatacttgctataatattgttgaaccatg-tttttatgactcctagagttaa |
488 |
Q |
| |
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||||||| || |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19392 |
tgtgattcataccctcttatgttatgcttgttaagtgataatgatacttgccataatattgttgaaccatgatttttatgactcctagagttaa |
19299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 95 - 312
Target Start/End: Original strand, 14820023 - 14820240
Alignment:
| Q |
95 |
tcagggtaacgttcaagtcatcaagtgtaataaccgatgttcgaagaaataggtactgctcaagagaagatggcaatactcaggctttatgcggatatga |
194 |
Q |
| |
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||||||||| | || ||||||||||||||||||| | | | |||| ||| ||||||| ||| ||||||||| |||||||| || |||| || |||||| |
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|
| T |
14820023 |
tcagggtaatgatcgagtcatcaagtgtaataactggtatccgaataaagaggtactagtcaggagaagatgacaatactcgagccttatccgaatatga |
14820122 |
T |
|
| Q |
195 |
agctctgaagattcaagttcagtattcttggaaatgagggaaa-agatgttgtcatgtgggtcaagaatccttcatgatttatgttatgcaataatgtat |
293 |
Q |
| |
|
|| ||||||||||||||||||||| | ||| ||| ||| ||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
14820123 |
agttctgaagattcaagttcagtacttttg-aaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaataatgtat |
14820221 |
T |
|
| Q |
294 |
gtctaagatatacatataa |
312 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
14820222 |
gtttaagatatacatataa |
14820240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 396 - 488
Target Start/End: Original strand, 14820320 - 14820413
Alignment:
| Q |
396 |
tgtgatttatgccctcttatgccatgcttgttaagtgataacgatacttgctataatattgttgaaccatg-tttttatgactcctagagttaa |
488 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
14820320 |
tgtgattcataccctcttatgttatgcttgttaagtgataatgatacttgccataatattgttgaaccatgatttttatgactcctagagttaa |
14820413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 540
Target Start/End: Original strand, 14278194 - 14278243
Alignment:
| Q |
491 |
tatgtattaagggacttggaaacgaagttattttttaaaacatgatattt |
540 |
Q |
| |
|
|||||| || ||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
14278194 |
tatgtagtaggggacttggaaacgaagttttctttaaaaacatgatattt |
14278243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 404 - 488
Target Start/End: Original strand, 12058693 - 12058777
Alignment:
| Q |
404 |
atgccctcttatgccatgcttgttaagtgataacgatacttgctataatattgttgaaccatgtttttatgactcctagagttaa |
488 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||| |
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|
| T |
12058693 |
atgccctcttatgtcatgcttgttaagtgataacgatacttgctataatattgtcggaccatgattttatgagtcctagagttaa |
12058777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 540
Target Start/End: Complemental strand, 23457423 - 23457351
Alignment:
| Q |
467 |
tttttatgactcctagagttaatgtatgtattaagggacttggaaacgaagttattttttaaaacatgatattt |
540 |
Q |
| |
|
||||||| ||||||||||| || | |||||| |||||||||||| |||||| | |||||||||||||||||| |
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|
| T |
23457423 |
tttttataactcctagagtcaagatgtgtattgtgggacttggaaaagaagtt-tattttaaaacatgatattt |
23457351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 15559479 - 15559549
Alignment:
| Q |
385 |
gttttacacgatgtgatttatgccctcttatgccatgcttgttaagtgataacgatacttgctataatatt |
455 |
Q |
| |
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||||| || ||||||||| || ||||||||||||||||| ||||| |||||| ||||||||| |||||||| |
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|
| T |
15559479 |
gttttgcaagatgtgattcataccctcttatgccatgctcgttaaatgataatgatacttgccataatatt |
15559549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 482
Target Start/End: Original strand, 2736 - 2819
Alignment:
| Q |
399 |
gatttatgccctcttatgccatgcttgttaagtgataacgatacttgctataatattgttgaaccatgtttttatgactcctag |
482 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||||||| ||||||||| | ||| |||||| || || |||||| |||||||| |
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|
| T |
2736 |
gatttataccttcttatgccatgctttttaagtgataatgatacttgccacaatgttgttgtacggtgattttataactcctag |
2819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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