View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1991_high_5 (Length: 296)
Name: NF1991_high_5
Description: NF1991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1991_high_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 32148362 - 32148067
Alignment:
| Q |
1 |
acacctgcggtgttgccccggggaatagcgttacccagagcgccatgagcggtgaactggctgaagatattttatcaatccaatcctctaatggcttcaa |
100 |
Q |
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| T |
32148362 |
acacctgcagtgttgccccagggaatagcgttacccagagcgccatgagcggtgaactggctgaagatattttatcaatccaatcctctaatggcttcaa |
32148263 |
T |
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| Q |
101 |
cttaggacgaaatgtcgcggtttcacgcttcctattctcatgtgcacgaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtctt |
200 |
Q |
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| T |
32148262 |
cccaggacaaaatgtcatggtttcacgcttcctattctcatgtgcacgaactttcttactagaaggacttgcaagtggtgcttctggtatggctggtctt |
32148163 |
T |
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| Q |
201 |
ggaagaaacaaattagctcttccatctcaattagcttcggcttttagctttgctaaaaaattcgctatttgcctttcctcttcaaagggagttgtt |
296 |
Q |
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| T |
32148162 |
ggaagaaacaaattagctcttccatctcaattagcttcggcttttagcttcgctaaaaaattcgctatttgtctttcctcttcaaagggagttgtt |
32148067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 32138949 - 32138677
Alignment:
| Q |
24 |
aatagcgttacccagagcgccatgagcggtgaactggctgaagatattttatcaatccaatcctctaatggcttcaacttaggacgaaatgtcgcggttt |
123 |
Q |
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| T |
32138949 |
aatagcattacccacaccgccaccagcggtgaacttgctgaagatgttttatcaatccaatcctctaatggcttcaacccaggacaaaatgtcgtggttt |
32138850 |
T |
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| Q |
124 |
cacgcttcctattctcatgtgcacgaactttcttactaaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaaacaaattagctcttcc |
223 |
Q |
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| T |
32138849 |
cacgcttcctattctcatgtgcaccaactttcttactaaaaggacttgcaactggtgcttctggtatggctggtcttggaagaaccaaaatagctcttcc |
32138750 |
T |
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| Q |
224 |
atctcaattagcttcggcttttagctttgctaaaaaattcgctatttgcctttcctcttcaaagggagttgtt |
296 |
Q |
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| T |
32138749 |
atctcaactagcttcggcttttagcttcgctagaaaattcgctatttgtctttcctcttcaaagggagttgtt |
32138677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 32127130 - 32126944
Alignment:
| Q |
60 |
gctgaagatattttatcaatccaatcctctaatggcttcaacttaggacgaaatgtcgcggtttcacgcttcctattctcatgtgcacgaactttcttac |
159 |
Q |
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| T |
32127130 |
gctgaagacgttttatccatccaatcaactagcggtttcaacacaggacaaaatgtcgttgtttcacgctttctattttcatgcgcaccaacatcattat |
32127031 |
T |
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| Q |
160 |
taaaaggacttgcaagtggtgcttctggtatggctggtcttggaagaaacaaattagctcttccatctcaattagcttcggctttta |
246 |
Q |
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| T |
32127030 |
tacgaggacttgcaggtggtgcttctggcatggctggtcttggaagaaccaaaatcgctcttccatctcaactagcttctgctttta |
32126944 |
T |
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