View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1991_high_6 (Length: 283)

Name: NF1991_high_6
Description: NF1991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1991_high_6
NF1991_high_6
[»] chr2 (1 HSPs)
chr2 (1-283)||(4886604-4886889)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 4886604 - 4886889
Alignment:
Q  1 caataataaatatttttacactaagtttaggtgaggatgctggtgatgtagggtcaatgagagagaga--atatatatatggaattagatagaag-gggg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||||    
T  4886604 caataataaatatttttacactaagtttaggtgaggatgctggtgatgtagggtcaatgagagagagagaatatatatatggaattagagagaagagggg 4886703  T
Q  98 gatgggaagtgagatgaaatgaggagaggagatcttcttttgagagtgtgtttgtgaattgtgatctttcaattcccccaagcatgatcatgtgggttgt 197  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4886704 gatgggaagtgagatgaaatgagaagaggagatcttcttttgagagagtgtttgtgaattgtgatctttcaattcccccaagcatgatcatgtgggttgt 4886803  T
Q  198 ggttttcattggaaagtgaagtttgatggatttcacactttatatgtacctaatggatggattgtaggttagtgaagtgctttaat 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4886804 ggttttcattggaaagtgaagtttgatggatttcacactttatatgtacctaatggatggattttaggttagtgaagtgctttaat 4886889  T

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