View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1991_low_1 (Length: 618)
Name: NF1991_low_1
Description: NF1991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1991_low_1 |
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| [»] scaffold0511 (2 HSPs) |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 231 - 430
Target Start/End: Complemental strand, 18871676 - 18871481
Alignment:
| Q |
231 |
cttatggtttgtaagtttaatacatttatttagaaagatactttaataaagtttttaattctgcttttttgaaattgtcattgtcttcatggtggatcac |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18871676 |
cttatggtttgtaagtttaatacatttatttagaaagatactttaataaagtttgtaaatctgcttttttgaaattgtcattgtcttcatggtggatcac |
18871577 |
T |
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| Q |
331 |
gaccgaccttacacgcaaatcatgtttacttgacagcattccaaagtctttgctgtatttctagtgctgcttcttttgttttcttcttcatgtgaataat |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18871576 |
----gaccttacacgcaaatcatgtttacttgacagcattccaaagtctttgctgtatttgtagtgctgcttcttttgttttcttcttcatgtgaataat |
18871481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 18792118 - 18791939
Alignment:
| Q |
231 |
cttatggtttgtaagtttaatacatttatttagaaagatactttaataaagtttttaattctgcttttttgaaattgtcattgtcttcatggtggatcac |
330 |
Q |
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| T |
18792118 |
cttatggtttgtaagtttaatacatttatttagaaagatactttaataaagtttgtaaatctgcttttttgaaattgtcattgtcttcatggtggatc-- |
18792021 |
T |
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| Q |
331 |
gaccgaccttacacgcaaatcatgtttacttgacagcattccaaagtctttgctgtatttctagtgctgcttcttttgttttct |
414 |
Q |
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| T |
18792020 |
--ccgaccttacacgcaaatcatgtttacttgacagcattccaaagtctttgctgtatttgtagtgctgcttcttttgttttct |
18791939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 18792232 - 18792151
Alignment:
| Q |
152 |
aaggattgtttgattaagaaaaaagactaagaaatttccaagtcaccttattttgttttttatgaaagactctcaaagtctt |
233 |
Q |
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| T |
18792232 |
aaggattgtttgattaagaaaaaagactaagaaatttccaagtcaccttattttgttttttatgaaagactctcaaagtctt |
18792151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 18871778 - 18871709
Alignment:
| Q |
164 |
attaagaaaaaagactaagaaatttccaagtcaccttattttgttttttatgaaagactctcaaagtctt |
233 |
Q |
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| T |
18871778 |
attaagaaaaaagactaagaaatttccaagtcaccttattttgttttttatgaaagactctcaaagtctt |
18871709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 14107015 - 14106934
Alignment:
| Q |
152 |
aaggattgtttgattaagaaaaaagactaagaaatttccaagtcaccttattttgttttttatgaaagactctcaaagtctt |
233 |
Q |
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| T |
14107015 |
aaggattgtttgactaagaaaaaagactaagaaatttcctagtcaccttattttgttttttatgaaagactttcagagtctt |
14106934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 155; Significance: 6e-82; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 231 - 414
Target Start/End: Original strand, 12023 - 12202
Alignment:
| Q |
231 |
cttatggtttgtaagtttaatacatttatttagaaagatactttaataaagtttttaattctgcttttttgaaattgtcattgtcttcatggtggatcac |
330 |
Q |
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| T |
12023 |
cttatggtttgtaagtttaatacatttatttagaaagatactttaataaagtttgtaaatctgcttttttgaaattgtcattgtcttcatggtggatc-- |
12120 |
T |
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| Q |
331 |
gaccgaccttacacgcaaatcatgtttacttgacagcattccaaagtctttgctgtatttctagtgctgcttcttttgttttct |
414 |
Q |
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| T |
12121 |
--ccgaccttacacgcaaatcatgtttacttgacagcattccaaagtctttgctgtatttgtagtgctgcttcttttgttttct |
12202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 11909 - 11990
Alignment:
| Q |
152 |
aaggattgtttgattaagaaaaaagactaagaaatttccaagtcaccttattttgttttttatgaaagactctcaaagtctt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11909 |
aaggattgtttgattaagaaaaaagactaagaaatttccaagtcaccttattttgttttttatgaaagactctcaaagtctt |
11990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 426 - 602
Target Start/End: Complemental strand, 11399 - 11221
Alignment:
| Q |
426 |
ataatagaaatgataaaaggaaaaaagtagtgtgt--tttgtccattgaagtgtt-ggactagagtgattaattattaattttatgggatagttgaagaa |
522 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||| || | | | |||||||||||||||||||||| | |
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| T |
11399 |
ataatagaaatgataag-ggaaaaaagtagtgtgtgttttgtccattgaagtgttaggaatagagcgagttactgataattttatgggatagttgaagga |
11301 |
T |
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| Q |
523 |
gtttaagatttatcattaattatttcacccaaaaagagaattaattnnnnnnntatcacatcatctttaaatgtttgata |
602 |
Q |
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| T |
11300 |
gtttaagatttatcagtaattatttcacacaaaaagagaattgattaaaaaaatatcacatcatttttaaatgtctgata |
11221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 14249534 - 14249674
Alignment:
| Q |
425 |
aataatagaaatgataaaaggaaaaaagtagtgtgt--tttgtccattgaagtgtt-ggactagagtgattaattattaattttatgggatagttgaaga |
521 |
Q |
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|||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||| ||||| || | | | |||||||||||||||||||||| |
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| T |
14249534 |
aataatagaaatga-aatgggaaaaaagtagtgtgtgttttgtccattgaagtgttaggaatagagcgagttactgataattttatgggatagttgaagg |
14249632 |
T |
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| Q |
522 |
agtttaagatttatcattaattatttcacccaaaaagagaat |
563 |
Q |
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| || ||||||||||| |||||||||||| |||||||||||| |
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| T |
14249633 |
aattgaagatttatcagtaattatttcacacaaaaagagaat |
14249674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 45055906 - 45055958
Alignment:
| Q |
511 |
atagttgaagaagtttaagatttatcattaattatttcacccaaaaagagaat |
563 |
Q |
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| T |
45055906 |
atagttgaaggagttgaagatttatcagtaattatttcacacaaaaagagaat |
45055958 |
T |
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