View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1991_low_3 (Length: 423)
Name: NF1991_low_3
Description: NF1991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1991_low_3 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 37 - 377
Target Start/End: Original strand, 27511138 - 27511486
Alignment:
| Q |
37 |
ttcttctattcaaccttaacaataatcacatcactgttgttcgtttcatctgtagtttccccatccttcattttaggcaaaacaaccttgagcacactac |
136 |
Q |
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| T |
27511138 |
ttcttctattcaaccttgacaataatcacattattgtcgttcctttcctccgtagtttccccatcctttattttaggcaaaacaaccttgagcacactac |
27511237 |
T |
|
| Q |
137 |
atttcatcttagctctaatctgatcaatcttgtaagatttccct-----atcaagcgtgcaagagggtttacgaccacctctctcgcctttaatgctaag |
231 |
Q |
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| T |
27511238 |
atttcatcctagctctaatctgatcgatcttgtaatgtctcccagttaaatcatgcgtgcaagaggattcacgaccacctctctcgcctttaatgctaag |
27511337 |
T |
|
| Q |
232 |
agtgttctgatacacattgatattcacatcttccttcaagcgttcaggcatatacatacggataagcatataatcctctgtctctctccaatggtagcga |
331 |
Q |
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||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27511338 |
agtattctgatacacgttgatattcacatcttccttaaagcgtccaggcatatacatacggataagcatataatcctctgtctctctccaatggtagcgg |
27511437 |
T |
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| Q |
332 |
ctttgaatgattcgaatcaccttt---ttgaagacgacttggttcatga |
377 |
Q |
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| T |
27511438 |
ctttgaatgattcgaatcacctttttgttgaagacgacttgattcatga |
27511486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 41570570 - 41570501
Alignment:
| Q |
102 |
cttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaa |
171 |
Q |
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| T |
41570570 |
cttcattttaggtacaataaccttaagcacaccatttttcatctcagctttaatctgatcaatcttgtaa |
41570501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 22 - 346
Target Start/End: Complemental strand, 78094 - 77779
Alignment:
| Q |
22 |
aatgaaaagaccaaattcttctattcaaccttaacaataatcacatcactgttgttcgtttcatctgtagtttccccatccttcattttaggcaaaacaa |
121 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||| |
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| T |
78094 |
aatgaaaagaccatattcttctattcaaccttgacaataatcacatcattgttgttccttccctctgtagtttccccatccttcattttaggcaaaacaa |
77995 |
T |
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| Q |
122 |
ccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccc-----tatcaagcgtgcaagagggtttacgaccacctctctc |
216 |
Q |
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| T |
77994 |
ccttgagcacactacatttcatcttagctgtaatctaataaatcttgtaatgtttcccggttaaatcaagtctgctagaggatttacgaccacctcgctc |
77895 |
T |
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| Q |
217 |
gcctttaatgctaagagtgttctgatacacattgatattcacatcttccttcaagcgttcaggcatatacatacggataagcatataatcctctgtctct |
316 |
Q |
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| T |
77894 |
acctttaatgctaagagtgttctgata------------cacatcttccttaatgcgtccaggcatatacatacgtataagcatataatc--ctgtctct |
77809 |
T |
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| Q |
317 |
ctccaatggtagcgactttgaatgattcga |
346 |
Q |
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|||||| | ||||| ||||||||||||||| |
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| T |
77808 |
ctccaacgttagcggctttgaatgattcga |
77779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 101 - 284
Target Start/End: Original strand, 33702282 - 33702465
Alignment:
| Q |
101 |
ccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccct-----atcaagcgtgcaaga |
195 |
Q |
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| T |
33702282 |
ccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaagatttccctgttaaatcaagtgtgcaaga |
33702381 |
T |
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| Q |
196 |
gggtttacgaccacctctctcgcctttaatgctaagagtgttctgatacacattgatattcacatcttccttcaagcgttcaggcatat |
284 |
Q |
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| T |
33702382 |
ggatttacgaccacctctctcgcctttaatgctaagagtgt-----tacacattgatattcacatcttccttcaagcgttcaggcatat |
33702465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 247084 - 247013
Alignment:
| Q |
100 |
tccttcattttaggcaaaacaaccttgagcacactacatttcatcttagctctaatctgatcaatcttgtaa |
171 |
Q |
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|||||||| ||||||| ||||||||| ||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
247084 |
tccttcatcttaggcacaacaaccttaagcacaccgtttttcatctcagctttaatctgatcaatcttgtaa |
247013 |
T |
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